PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G070700.2 | ||||||||
Common Name | POPTR_0002s07150g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 294aa MW: 33322.9 Da PI: 4.3627 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.5 | 2e-35 | 31 | 86 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvP Ggg+rk +++ Potri.002G070700.2 31 PNCPRCASPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPAGGGCRKYRRN 86 58**************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-28 | 19 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-30 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.838 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MYSASDQMMF QCPPRPFPME RKWKSNIEVA PNCPRCASPN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTKGGS LRNVPAGGGC RKYRRNERAA VSLDYSRANE TLACSSNKDS VAQQDGANGS 120 DIDLAAVFSK FLNQDLSYGP EFIGEELRDE GSELVNISNS STPISDSYQN DPMMESLKRS 180 DLTQESNLLE GRSQVLVGEK QQFEEDQRFQ ELIESQDMNA FGLQNLLIDE IVQDALWSDD 240 ATLPHVPNWQ PMVQLQDFDS FSVDDRLKIS ANFTSDDNWS SFDLSGFEVF PRP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 179 | ESLKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.12250 | 0.0 | bud| catkin |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G070700.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU222746 | 1e-137 | CU222746.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024451995.1 | 0.0 | dof zinc finger protein DOF1.2 | ||||
TrEMBL | A0A2K2BES3 | 0.0 | A0A2K2BES3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s07150.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21340.1 | 1e-44 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G070700.2 |
Entrez Gene | 7467828 |