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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.002G068600.1 |
Common Name | POPTR_0002s06920g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
Trihelix |
Protein Properties |
Length: 606aa MW: 67207.1 Da PI: 7.9415 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.002G068600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 93.3 | 2.4e-29 | 63 | 147 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe++aL+++r++m+ ++r+++ k+plWe+vs+k++e g++rs+k+Ckek+en+ k++k++k+g++++ ++ +t+++fdqlea
Potri.002G068600.1 63 RWPRQETMALLKIRSDMDVAFRDASVKGPLWEDVSRKLAELGYNRSAKKCKEKFENVYKYHKRTKDGRSGK--QEGKTYRFFDQLEA 147
8********************************************************************96..55557*******85 PP
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2 | trihelix | 100.4 | 1.4e-31 | 429 | 514 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev aLi +r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
Potri.002G068600.1 429 RWPKVEVEALIGLRTNLDCKYQENGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHQLDA 514
8*********************************************************************8.99***********85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 606 aa
Download sequence Send
to blast |
MLGDSSSVLA TTTTTLAASG GGGVGNREAP PLTGGHHEGR NIDVGGEDDK GVIEGHRGIG 60 GNRWPRQETM ALLKIRSDMD VAFRDASVKG PLWEDVSRKL AELGYNRSAK KCKEKFENVY 120 KYHKRTKDGR SGKQEGKTYR FFDQLEAFQS HPPSLSSPLP PQPTKPHIPP ANTIAMPVVN 180 PSPNVVGTSR NTVPSTAAAT LATNTSQGIV TSAINLAVPP FPSTDPTICP PSQATNPTNH 240 PRTNIPSSFP NFSSDLNSNS TSSSTSSDVE LQGRRKRKRK WKDFFERLMT EVIQKQEETQ 300 NKFLEAIAKR ENERMVREES WRMQEMARIN REREISAQER SIAATKDAAV MAFLQKLSEQ 360 QNPGQVQNNP PPTQPPPPAL PPISQQTPTP TPPPPLPVAQ VPPPQPVANL DIMKSDNGDQ 420 NFMSASSSRW PKVEVEALIG LRTNLDCKYQ ENGPKGPLWE EISAGMRKLG YNRNAKRCKE 480 KWENINKYFK KVKESSKKRP EDSKTCPYFH QLDALYKEKN KIDGPSNSTH HMKPQNSVPL 540 MVLPEQQWPP AQQEHRPDSM MGDLESDDNQ NQEDGDDKFM DDEDEDEASG YEIVANKQTS 600 MNTAG*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 273 | 278 | RRKRKR |
2 | 273 | 279 | RRKRKRK |
3 | 274 | 279 | RKRKRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |