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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.002G068400.1 |
Common Name | POPTR_0002s06900g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
Trihelix |
Protein Properties |
Length: 594aa MW: 66528 Da PI: 5.392 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.002G068400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 94.1 | 1.3e-29 | 60 | 144 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW++qe+laL+++r++m+ +r++ lk+plWeevs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++++++s +++fd+lea
Potri.002G068400.1 60 RWPRQETLALLKIRSDMDAVFRDSGLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKS--YKFFDELEA 144
8********************************************************************9877776..******985 PP
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2 | trihelix | 103.8 | 1.3e-32 | 407 | 492 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev+aLi++r +++ +++++ +k+plWe++s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyfdql+a
Potri.002G068400.1 407 RWPKVEVQALINLRANLDVKYQENGAKGPLWEDISAGMQKLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFDQLDA 492
8*********************************************************************8.99***********85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 594 aa
Download sequence Send
to blast |
MIGDSSVQAT SSDVAATATR VATEGGEGGG GGGFGSNSAE EDKTMGVDHE GNRMNYGANR 60 WPRQETLALL KIRSDMDAVF RDSGLKGPLW EEVSRKLAEL GYHRSAKKCK EKFENVYKYH 120 KRTKEGRTGK SEGKSYKFFD ELEAFQNHPP HSTQPPTLTP PPLPPPKAQT ASATITTLPW 180 TNNNTAIVSH ATVPSRTNPM DIMSQSIATP TNNRAISPMP ISSNPINPSQ NAYPSSLQNL 240 TTHLLASSSP SSTASDEELE VSYKKRKRES NWKDFFERLT RDVIKKQEDL QEKFLETIEK 300 YEHERMAREE AWRMQEMARI NREHETLIQE RSTAAAKDAA VVAFLQKISG QQNSVQTQEI 360 PQPTTTPTAP PSQPLQLRPP PSLAPVAKLE VPKRDNGDNF TVSSSSRWPK VEVQALINLR 420 ANLDVKYQEN GAKGPLWEDI SAGMQKLGYN RSAKRCKEKW ENINKYFKKV KESNKKRPED 480 SKTCPYFDQL DALYKEKNKM EITVNSDYAV KPTSTMEPLM VRPEQQWPFQ QATQPQTIIE 540 DNERNINIDH NIEDDDDDDV VVDDDDVDTD EEDEGGGFEV VANKSAPLVN GDQ*
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JN315782 | 0.0 | JN315782.1 Populus tomentosa SANT DNA-binding domain-containing protein (GT2) gene, complete cds. |