PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G055400.7 | ||||||||
Common Name | POPTR_0002s05630g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 53981.3 Da PI: 6.7498 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.8 | 7.1e-17 | 335 | 381 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Potri.002G055400.7 335 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 381 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.68E-21 | 329 | 392 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 331 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.47E-17 | 334 | 385 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-20 | 335 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.5E-14 | 335 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.3E-18 | 337 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MNHCIPDWNL EGDLPVSNQK NPIEPDNELV ELLWRNGQVV MHSQTQRKPN PHVQKHDSPT 60 VRGYDSTLNS SHLIQDDETV SWIHDPLEDS FEKEFCSNFF SELPPPLSDQ ISEEKSAKFD 120 ASKTSHQQQQ LNNNKHPVVP EFPGNPMPPP RIQVQEQNHI SVGGFGKAVN VNFSQFSAPL 180 KVGDFRSSSR QFGGQGSGDF SQGEARECSV VTVGSSNQTP RDRFLSRASG NAIETGTGLS 240 AGPSIDDPRK VISQSERGKG DQTLDPTATS SSGGSGSSFA RTCKQSAVPS RGQKRKTMDA 300 EESECQSEDA ELDSAVANKP AKRSGSTRRS RAAEVHNLSE RRRRDRINEK MRALQELIPH 360 CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGIVPVMFPG VQHFMSRMGM GMGMGPPPLP 420 SMQNPMHLPR VPLVDQSISM TPTQNQAVIC QTPVLNPVNY QNQMQNPTFS DQYARFMGFH 480 MQAASQVL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 344 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.17976 | 0.0 | catkin| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G055400.7 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006386276.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_024449874.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_024449875.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_024449876.1 | 0.0 | transcription factor PIF4 | ||||
TrEMBL | B9GSQ9 | 0.0 | B9GSQ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s05630.2 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.1 | 4e-48 | phytochrome interacting factor 3-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G055400.7 |
Entrez Gene | 7480707 |