PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G055400.6
Common NamePOPTR_0002s05630g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 492aa    MW: 53642.8 Da    PI: 6.8414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G055400.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.2e-17335381455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Potri.002G055400.6 335 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 381
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.81E-21329392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.457331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-17334385No hitNo description
PfamPF000103.5E-14335381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-20335389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-18337386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MNHCIPDWNL EGDLPVSNQK NPIEPDNELV ELLWRNGQVV MHSQTQRKPN PHVQKHDSPT  60
VRGYDSTLNS SHLIQDDETV SWIHDPLEDS FEKEFCSNFF SELPPPLSDQ ISEEKSAKFD  120
ASKTSHQQQQ LNNNKHPVVP EFPGNPMPPP RIQVQEQNHI SVGGFGKAVN VNFSQFSAPL  180
KVGDFRSSSR QFGGQGSGDF SQGEARECSV VTVGSSNQTP RDRFLSRASG NAIETGTGLS  240
AGPSIDDPRK VISQSERGKG DQTLDPTATS SSGGSGSSFA RTCKQSAVPS RGQKRKTMDA  300
EESECQSEDA ELDSAVANKP AKRSGSTRRS RAAEVHNLSE RRRRDRINEK MRALQELIPH  360
CNKTDKASML DEAIEYLKSL QLQLQVMWMG SGIVPVMFPG VQHFMSRMGM GMGMGPPPLP  420
SMQNPMHLPR VPLVDQSISM TPTQNQAPMN MFRFGSQTVQ QNQMMAPPNS GGGPLSAGTA  480
ASDAPPSGKT G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339344ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.179760.0catkin| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G055400.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006386276.10.0transcription factor PIF4
RefseqXP_024449874.10.0transcription factor PIF4
RefseqXP_024449875.10.0transcription factor PIF4
RefseqXP_024449876.10.0transcription factor PIF4
TrEMBLB9GSQ90.0B9GSQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s05630.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.26e-40phytochrome interacting factor 4