PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 213aa MW: 23866.3 Da PI: 9.9712

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G043300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.4	9.7e-20	70	119	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa a+++a+++l+g Potri.002G043300.1 70 HFRGVRKRP-WGRFAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 119 69*****.******883....5999********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	4.6E-30	69	127	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-21	70	127	IPR016177	DNA-binding domain
Pfam	PF00847	1.6E-12	70	119	IPR001471	AP2/ERF domain
SMART	SM00380	1.7E-33	70	133	IPR001471	AP2/ERF domain
CDD	cd00018	7.00E-30	70	126	No hit	No description
PROSITE profile	PS51032	21.562	70	127	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.6E-10	71	82	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.6E-10	93	109	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MYPPLTFNLY TFSSPRTKTT LSYTLTLYGA LTTMAVDAWR RRNDTVTTTL SLAGPPAPPT 60 PAVENEPQRH FRGVRKRPWG RFAAEIRDPW KKTRRWLGTF DTAEEAALAY DEAARSLRGP 120 KARTNFFHRD HLAPLPFLQT TVVGAGGLKI WCSPVFLSDE VSRMAAPTAV APVRSEYQGY 180 KIESVDENVG LVLNEEKQRP LLFDLNLPAP LF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-19	69	126	4	62	ATERF1
3gcc_A	1e-19	69	126	4	62	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G043300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002300797.1	1e-129	ethylene-responsive transcription factor 9
Swissprot	Q9FE67	2e-28	ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBL	A0A3N7ENU2	1e-128	A0A3N7ENU2_POPTR; Uncharacterized protein
STRING	POPTR_0002s04430.1	1e-129	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF330	34	189
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44210.1	6e-23	erf domain protein 9

Link Out ? help Back to Top
Phytozome	Potri.002G043300.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]