PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 143aa MW: 16522.1 Da PI: 5.7542

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G039200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	2.9e-19	21	71	3	56
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+G+r+++ +g+++AeIrdp+ ng +r +lg+f+taeeAa+a+++a+ +++g+ Potri.002G039200.1 21 YRGIRRRP-WGKFAAEIRDPTRNG--TRRWLGTFDTAEEAARAYDRAAFAFRGH 71 9*****.******98887..999********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.8E-36	20	84	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.18E-23	20	79	IPR016177	DNA-binding domain
PROSITE profile	PS51032	24.5	20	78	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.7E-31	20	80	IPR001471	AP2/ERF domain
CDD	cd00018	3.47E-30	21	79	No hit	No description
PRINTS	PR00367	4.1E-11	21	32	IPR001471	AP2/ERF domain
Pfam	PF00847	5.1E-13	21	71	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.1E-11	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
METYQGEKNT KKQEKRRENA YRGIRRRPWG KFAAEIRDPT RNGTRRWLGT FDTAEEAARA 60 YDRAAFAFRG HLAILNFPNE YQHQETNSTM SFASSSSFST ENPLSYGNEV SSTNGQEVIE 120 FEYLDNKLLE ELLETDDHSR QL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-29	21	128	15	114	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	27	KKQEKRRENAYRGIRRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G039200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002300780.1	1e-102	ethylene-responsive transcription factor ERF098
Swissprot	Q9LTC5	2e-45	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	B9GS21	1e-101	B9GS21_POPTR; Uncharacterized protein
STRING	POPTR_0002s04030.1	1e-102	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	3e-34	ERF family protein

Link Out ? help Back to Top
Phytozome	Potri.002G039200.1
Entrez Gene	7471972

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]