PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 237aa MW: 25968.2 Da PI: 8.4587

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G039000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.3	2.5e-15	106	155	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g ++AeIrd + ng r++lg+f t e Aa a+++a+++l g Potri.002G039000.1 106 YRGVRNRP-WGTYAAEIRDSTRNG--VRVWLGTFETGEAAALAYDQAALSLQG 155 9**777.******44465..*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.128	105	163	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.38E-20	105	165	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.4E-28	105	164	IPR001471	AP2/ERF domain
SMART	SM00380	4.6E-32	105	169	IPR001471	AP2/ERF domain
CDD	cd00018	2.29E-16	106	164	No hit	No description
PRINTS	PR00367	5.0E-9	106	117	IPR001471	AP2/ERF domain
Pfam	PF00847	1.7E-10	106	155	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.0E-9	129	145	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDHSFFFNNP NQEFSTSPPF GLLDPSWDKL PGFSPFNSND SEGSQETLPS DVPLTEAKAS 60 THSIASDVPP NIAKNNLPQL SSSKEIEEQE ATPKAKKNIP TRKKTYRGVR NRPWGTYAAE 120 IRDSTRNGVR VWLGTFETGE AAALAYDQAA LSLQGSKAVL NFPIEQVRKS LEELKCGFTD 180 WCSPAEALKK THSKRKPVSG KRKGKGLATK EVLVLEDLGA DYLETLLSSC ERGIPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-25	104	164	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269\|PubMed:23057995, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G039000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269\|PubMed:28733419}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302048.2	1e-175	ethylene-responsive transcription factor 1B
Swissprot	A0A3Q7I5Y9	5e-51	ERFC3_SOLLC; Ethylene-response factor C3
TrEMBL	A0A2K2BD47	1e-173	A0A2K2BD47_POPTR; Uncharacterized protein
STRING	POPTR_0002s04010.1	1e-160	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17133	3	8
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23240.1	8e-42	ethylene response factor 1

Link Out ? help Back to Top
Phytozome	Potri.002G039000.1
Entrez Gene	7471970

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Pirrello J, et al. Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene. BMC Plant Biol., 2012. 12: p. 190 [PMID:23057995] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419]