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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Potri.002G035200.1 | ||||||||
| Common Name | POPTR_0002s03660g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | ZF-HD | ||||||||
| Protein Properties | Length: 294aa MW: 32837.5 Da PI: 8.1868 | ||||||||
| Description | ZF-HD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | ZF-HD_dimer | 99.7 | 2e-31 | 72 | 128 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
+++rY eCl+NhAas+Gg+++DGCgEfmp geeg+ +alkCaAC+CHRnFHRre +
Potri.002G035200.1 72 SNTRYLECLRNHAASVGGNVFDGCGEFMPG-GEEGSLEALKCAACDCHRNFHRRELDG 128
5789*************************9.999********************9876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD125774 | 4.0E-22 | 67 | 130 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Pfam | PF04770 | 1.6E-28 | 74 | 126 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| TIGRFAMs | TIGR01566 | 2.0E-28 | 75 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| PROSITE profile | PS51523 | 26.241 | 76 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
| Gene3D | G3DSA:1.10.10.60 | 1.0E-29 | 212 | 282 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 8.61E-19 | 212 | 281 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01565 | 1.7E-29 | 221 | 278 | IPR006455 | Homeodomain, ZF-HD class |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 294 aa Download sequence Send to blast |
MEIRGPENDI RTSVPSSYSH QSSGLERRKD GNHNGSSVLT FTQTLDHPRQ PSRSPNPDRL 60 AIISSGSNSK TSNTRYLECL RNHAASVGGN VFDGCGEFMP GGEEGSLEAL KCAACDCHRN 120 FHRRELDGEI QFSPGSRRST TMVHSLQLAP PLPSPTVLHH HHHHQRYSMG LHTSPNTANM 180 VQPMSVAFGG TSGGTESSSE ELNPFQSNAE GAPPPPYVMS KKRHRTKFTQ EQKDKMMEFA 240 EKVGWRINKQ DEEEVERFCA EVGVRRQVFK VWMHNNKNLK KQQQQQVPLD ENP* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wh7_A | 5e-24 | 220 | 278 | 16 | 74 | ZF-HD homeobox family protein |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Pth.14512 | 0.0 | bud | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Potri.002G035200.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002302028.1 | 0.0 | zinc-finger homeodomain protein 5 | ||||
| Swissprot | Q9FRL5 | 5e-65 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
| TrEMBL | B9GRN0 | 0.0 | B9GRN0_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0002s03660.1 | 0.0 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF206 | 34 | 253 |
| Representative plant | OGRP91 | 16 | 237 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G14440.2 | 1e-51 | homeobox protein 31 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Potri.002G035200.1 |
| Entrez Gene | 7479741 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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