PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G031000.1
Common NamePOPTR_0002s03240g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 705aa    MW: 77874.8 Da    PI: 6.418
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G031000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.2e-094494861954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +e+  LA++ gLt +qV +WF N R +
  Potri.002G031000.1 449 FEHflHPYPSDSEKIMLARQAGLTRSQVANWFINARVR 486
                         664459******************************88 PP
2BELL115.42.9e-37313384172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erq+l  kk+kLls+leeVd++Ykqy++q+q+v+  F++vag+g+ak+Yt+lAl++iSrhFrcL+dai++qi
  Potri.002G031000.1 313 ERQDLLDKKTKLLSMLEEVDRKYKQYYHQMQIVVLYFDTVAGHGAAKSYTALALQTISRHFRCLRDAISGQI 384
                         789999*****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-60234382IPR006563POX domain
PfamPF075261.3E-46240381IPR006563POX domain
PROSITE profilePS5007112.6427490IPR001356Homeobox domain
CDDcd000866.37E-13430491No hitNo description
SMARTSM003898.4E-10430494IPR001356Homeobox domain
SuperFamilySSF466897.7E-17431497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27433496IPR009057Homeodomain-like
PfamPF059204.9E-17447486IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MATYYPTSRS QNNNLHALLT GDQKLASYSD LPSDLSSMKS YTNHTPAAGS YSDILYGGSL  60
SSQNGAEFSS SGARNEIVFI PPTSDTMNLQ SVGGQLNTAA GNLVGDSVSG DSQAVPPRMH  120
LGIPDCEQNF QSQGLPLRLG MQVQSAVSMP SLQYQYLNQN FPSSLSSHLL VPEKWTLPCE  180
GDESNQSKEL REFEGLPGFA GSSHNPIKTE SSHNPQYIVG LRDMHAEMNM YGLSGYANTL  240
LNSRYLKSVQ HLLDEVVNVK KALKQPQSNK CSDDFKESDR RPSSCSMLPS SNVKPPDPAE  300
STADSTPELS PVERQDLLDK KTKLLSMLEE VDRKYKQYYH QMQIVVLYFD TVAGHGAAKS  360
YTALALQTIS RHFRCLRDAI SGQIEVIMKR LGEQGTSPNG QGGIPRLRYV DHQTRQQRAL  420
QQLGVMRHAW RPQRGLPESS VSVLRAWLFE HFLHPYPSDS EKIMLARQAG LTRSQVANWF  480
INARVRLWKP MVEDMYKEEF GDSETNSKSS LDETTKAHGD KSGNHLTSEN RLRELYESVT  540
STAADISQPG QAHDIKSSHI LELEMKEPMA KTVLENGSQG PNVAESDIMK FPRDRRLNID  600
DDHNFCPHGN IPCGQNGDGN LMSAAATYDV SHLNGFAVGS QMSLALGLQS NDSDSFPTFD  660
GAHMRGNTIS ASSVGHNEVD YHCMDTGKQQ DRIANSHRLH DFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16436493158Homeobox protein Meis1
4xrs_B4e-16436493158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G031000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302014.30.0BEL1-like homeodomain protein 7 isoform X1
RefseqXP_024450352.10.0BEL1-like homeodomain protein 7 isoform X1
TrEMBLA0A2K2BCN50.0A0A2K2BCN5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s03240.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-113BEL1-like homeodomain 3