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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.002G028500.1 |
| Common Name | POPTR_0002s03000g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
SRS |
| Protein Properties |
Length: 322aa MW: 35286.7 Da PI: 8.136 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.002G028500.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 228.2 | 1.5e-70 | 93 | 251 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.........aeaaskrkrelkskkqsa 85
g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa+++++++++ + +++kr+re+ + +s+
Potri.002G028500.1 93 GGMNCQDCGNQAKKDCPHSRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQEQQqqqqqqqqfRGENPKRQREN-QGGASS 182
789***************************************************999888776655666555545555555554.677888 PP
DUF702 86 lsstklssaes.kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
l++t+l++++s + le++ +P+ev+s+avfrcv+vs++dd+e++laYqtav+igGhvf+GiLydqG++
Potri.002G028500.1 183 LACTRLATTTSdQLGLEMTAFPPEVNSQAVFRCVKVSALDDAEDQLAYQTAVNIGGHVFRGILYDQGPD 251
99999988776155799999***********************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MAGWFYLGER EGPSSKQDQE KEVNNSSLFL YRSSNEEIYN NNKGFELWPQ YYPQQQNMNS 60
FSFGVGPSRR NFSDDHSPRS GFTVMRQGGG LGGGMNCQDC GNQAKKDCPH SRCRTCCKSR 120
GFQCQTHVKS TWVPAAKRRE RQQQLAALQQ QNQEQQQQQQ QQQQFRGENP KRQRENQGGA 180
SSLACTRLAT TTSDQLGLEM TAFPPEVNSQ AVFRCVKVSA LDDAEDQLAY QTAVNIGGHV 240
FRGILYDQGP DGRYTSTGGE SSSSGAQQLG LITAATTSTT ATTTNTGNPA AGNTLFDPSS 300
LYPAPLNAFI AGTQFFPPPR S*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP011966 | 1e-125 | AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence. |
