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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.002G026700.1 | ||||||||
Common Name | POPTR_0002s02820g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 337aa MW: 37384 Da PI: 9.7837 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 392.2 | 7.3e-120 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye.........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdn 79 mdd g+re r+k+ +y+ p++s+k q+m+++aerda+i+ern+alsekkaa+aerdmaflqrd+a+aern+al+erdn Potri.002G026700.1 1 MDDGGHREngRHKAdQYKtaqgqwlmqPQPSMK-----QIMAIMAERDAAIHERNMALSEKKAAIAERDMAFLQRDSAIAERNNALLERDN 86 9*****999*****9***776666654445555.....***************************************************** PP GAGA_bind 80 kllalllvensla....salpvgvqvlsgtksidslqq.lse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163 ++++l+++ensl +++p+g + ++g+k++++ qq +++ p++++ ++++re+++++alp++ +a+e++k+++++r+k++ k Potri.002G026700.1 87 AIATLQYRENSLPsgnmTTCPPGFHNSRGVKHMHHQQQqHTHhlPHMNEGPYGTREMQTSDALPVSP---VASEVAKPQRGKRPKDA---K 171 **********987888899***************99994334799*******************876...55566666644455444...4 PP GAGA_bind 164 akkkkkksekskkkvkkesader...........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227 a+ +kk++ks +kvk+es+d++ sk+++k +dl+ln+v++De+t+P+PvCsCtG+ rqCYkWGn Potri.002G026700.1 172 ATPSNKKTSKSPRKVKRESDDTDmfgkshewkngqdmdgggddpnkqlaaSKSDWKGQDLGLNQVAFDETTMPAPVCSCTGVFRQCYKWGN 262 44444445566667777776644577889999*********************************************************** PP GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG dlsnpvDLkdhWAkHGtn+++ti+ Potri.002G026700.1 263 GGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336 *************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.3E-195 | 1 | 336 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.0E-105 | 1 | 336 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MDDGGHRENG RHKADQYKTA QGQWLMQPQP SMKQIMAIMA ERDAAIHERN MALSEKKAAI 60 AERDMAFLQR DSAIAERNNA LLERDNAIAT LQYRENSLPS GNMTTCPPGF HNSRGVKHMH 120 HQQQQHTHHL PHMNEGPYGT REMQTSDALP VSPVASEVAK PQRGKRPKDA KATPSNKKTS 180 KSPRKVKRES DDTDMFGKSH EWKNGQDMDG GGDDPNKQLA ASKSDWKGQD LGLNQVAFDE 240 TTMPAPVCSC TGVFRQCYKW GNGGWQSSCC TTTLSMYPLP AVPNKRHARV GGRKMSGSAF 300 SKLLSRLAAE GQDLSNPVDL KDHWAKHGTN RYITIK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2429 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.002G026700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ982263 | 0.0 | FJ982263.1 Populus trichocarpa GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301996.2 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Refseq | XP_024451553.1 | 0.0 | protein BASIC PENTACYSTEINE6 | ||||
Swissprot | Q8L999 | 1e-157 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | B9GQZ0 | 0.0 | B9GQZ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s02820.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6905 | 34 | 49 | Representative plant | OGRP2841 | 13 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 1e-158 | basic pentacysteine 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.002G026700.1 |
Entrez Gene | 7479698 |