PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G002400.5

Common Name

POPTR_0002s00440g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 1045aa MW: 116115 Da PI: 8.0241

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G002400.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.5	1.3e-40	106	183	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ Potri.002G002400.5 106 MCQVDNCKEDLSKAKDYHRRHKVCQVHSKATKALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 183 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-33	101	168	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.727	104	181	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.49E-37	105	185	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.1E-29	107	180	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1045 aa Download sequence Send to blast
MEEVGAQVAA PIFIHEALSS RYCDMTSMAK KHDLSYQSPN SQLQQHQFLQ ASREKNWNSK 60 AWDWDSVDDD GLGLNLGGSL TSVEEPVSRP NKRVRSGSPG NGSYPMCQVD NCKEDLSKAK 120 DYHRRHKVCQ VHSKATKALV GKQMQRFCQQ CSRFHPLTEF DEGKRSCRRR LAGHNRRRRK 180 TQPEDVTSRL LLPGNPDMNN NGNLDIVNLL TALARSQGKT YLPMIDFYVP PFVLTNCPTV 240 PDKDQLIQIL NKINSLPLPM DLAAKLSNIA SLNVKNPNQP YLGHQNRLNG TASSPSTNDL 300 LAVLSTTLAA SAPDALAILS QRSSQSSDND KSKLPGPNQV TVPHLQKRSN VEFPAVGVER 360 ISRCYESPAE DSDYQIQESR PNLPLQLFSS SPENESRQKP ASSGKYFSSD SSNPIEERSP 420 SSSPPVVQKL FPLQSTAETM KSEKMSVSRE VNANVEGDRS HGCVLPLELF RGPNREPDHS 480 SFQSFPYRGG YTSSSGSDHS PSSQNSDPQD RTGRIIFKLF DKDPSHFPGT LRTKIYNWLS 540 NSPSEMESYI RPGCVVLSVY LSMPSASWEQ LERNLLQLVD SLVQDSDSDL WRSGRFLLNT 600 GRQLASHKDG KVRLCKSWRT WSSPELILVS PVAVIGGQET SLQLKGRNLT GPGTKIHCTY 660 MGGYTSKEVT DSSSPGSMYD EINVGGFKIH GPSPSILGRC FIEVENGFKG NSFPVIIADA 720 SICKELRLLE SEFDENAVVS NIVSEEQTRD LGRPRSREEV MHFLNELGWL FQRKSMPSMH 780 EAPDYSLNRF KFLLIFSVER DYCVLVKTIL DMLVERNTCR DELSKEHLEM LYEIQLLNRS 840 VKRRCRKMAD LLIHYSIIGG DNSSRTYIFP PNVGGPGGIT PLHLAACASG SDGLVDALTN 900 DPHEIGLSCW NSVLDANGLS PYAYAVMTKN HSYNLLVARK LADKRNGQIS VAIGNEIEQA 960 ALEQEHVTIS QFQRERKSCA KCASVAAKMH GRFLGSQGLL QRPYVHSMLA IAAVCVCVCL 1020 FFRGAPDIGL VAPFKWENLN YGTI*

Sequence ? help Back to Top

Protein Sequence Length: 1045 aa Download sequence Send to blast

MEEVGAQVAA PIFIHEALSS RYCDMTSMAK KHDLSYQSPN SQLQQHQFLQ ASREKNWNSK  60
AWDWDSVDDD GLGLNLGGSL TSVEEPVSRP NKRVRSGSPG NGSYPMCQVD NCKEDLSKAK  120
DYHRRHKVCQ VHSKATKALV GKQMQRFCQQ CSRFHPLTEF DEGKRSCRRR LAGHNRRRRK  180
TQPEDVTSRL LLPGNPDMNN NGNLDIVNLL TALARSQGKT YLPMIDFYVP PFVLTNCPTV  240
PDKDQLIQIL NKINSLPLPM DLAAKLSNIA SLNVKNPNQP YLGHQNRLNG TASSPSTNDL  300
LAVLSTTLAA SAPDALAILS QRSSQSSDND KSKLPGPNQV TVPHLQKRSN VEFPAVGVER  360
ISRCYESPAE DSDYQIQESR PNLPLQLFSS SPENESRQKP ASSGKYFSSD SSNPIEERSP  420
SSSPPVVQKL FPLQSTAETM KSEKMSVSRE VNANVEGDRS HGCVLPLELF RGPNREPDHS  480
SFQSFPYRGG YTSSSGSDHS PSSQNSDPQD RTGRIIFKLF DKDPSHFPGT LRTKIYNWLS  540
NSPSEMESYI RPGCVVLSVY LSMPSASWEQ LERNLLQLVD SLVQDSDSDL WRSGRFLLNT  600
GRQLASHKDG KVRLCKSWRT WSSPELILVS PVAVIGGQET SLQLKGRNLT GPGTKIHCTY  660
MGGYTSKEVT DSSSPGSMYD EINVGGFKIH GPSPSILGRC FIEVENGFKG NSFPVIIADA  720
SICKELRLLE SEFDENAVVS NIVSEEQTRD LGRPRSREEV MHFLNELGWL FQRKSMPSMH  780
EAPDYSLNRF KFLLIFSVER DYCVLVKTIL DMLVERNTCR DELSKEHLEM LYEIQLLNRS  840
VKRRCRKMAD LLIHYSIIGG DNSSRTYIFP PNVGGPGGIT PLHLAACASG SDGLVDALTN  900
DPHEIGLSCW NSVLDANGLS PYAYAVMTKN HSYNLLVARK LADKRNGQIS VAIGNEIEQA  960
ALEQEHVTIS QFQRERKSCA KCASVAAKMH GRFLGSQGLL QRPYVHSMLA IAAVCVCVCL  1020
FFRGAPDIGL VAPFKWENLN YGTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	97	180	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	25215497	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G002400.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450222.1	0.0	squamosa promoter-binding-like protein 14 isoform X1
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2K2BB79	0.0	A0A2K2BB79_POPTR; Uncharacterized protein
STRING	POPTR_0002s00440.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Potri.002G002400.5
Entrez Gene	7474540

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]