PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.002G002400.4

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

SBP

Protein Properties

Length: 992aa MW: 110343 Da PI: 8.2506

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.002G002400.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.2e-40	145	222	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ Potri.002G002400.4 145 MCQVDNCKEDLSKAKDYHRRHKVCQVHSKATKALVGKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 222 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-33	140	207	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.727	143	220	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.1E-37	144	224	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-29	146	219	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MEEVGAQVAA PIFIHEALSS RYCDMTSMAK KHDLSYQSPN SQLQQHQFLQ ASREKNWNSK 60 AWDWDSVGFV AKPSVAAETL RLGTVSREPK KKDKSDSKNK SNSVNEDDDG LGLNLGGSLT 120 SVEEPVSRPN KRVRSGSPGN GSYPMCQVDN CKEDLSKAKD YHRRHKVCQV HSKATKALVG 180 KQMQRFCQQC SRFHPLTEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLL LPGNPDMNNN 240 GNLDIVNLLT ALARSQASAP DALAILSQRS SQSSDNDKSK LPGPNQVTVP HLQKRSNVEF 300 PAVGVERISR CYESPAEDSD YQIQESRPNL PLQLFSSSPE NESRQKPASS GKYFSSDSSN 360 PIEERSPSSS PPVVQKLFPL QSTAETMKSE KMSVSREVNA NVEGDRSHGC VLPLELFRGP 420 NREPDHSSFQ SFPYRGGYTS SSGSDHSPSS QNSDPQDRTG RIIFKLFDKD PSHFPGTLRT 480 KIYNWLSNSP SEMESYIRPG CVVLSVYLSM PSASWEQLER NLLQLVDSLV QDSDSDLWRS 540 GRFLLNTGRQ LASHKDGKVR LCKSWRTWSS PELILVSPVA VIGGQETSLQ LKGRNLTGPG 600 TKIHCTYMGG YTSKEVTDSS SPGSMYDEIN VGGFKIHGPS PSILGRCFIE VENGFKGNSF 660 PVIIADASIC KELRLLESEF DENAVVSNIV SEEQTRDLGR PRSREEVMHF LNELGWLFQR 720 KSMPSMHEAP DYSLNRFKFL LIFSVERDYC VLVKTILDML VERNTCRDEL SKEHLEMLYE 780 IQLLNRSVKR RCRKMADLLI HYSIIGGDNS SRTYIFPPNV GGPGGITPLH LAACASGSDG 840 LVDALTNDPH EIGLSCWNSV LDANGLSPYA YAVMTKNHSY NLLVARKLAD KRNGQISVAI 900 GNEIEQAALE QEHVTISQFQ RERKSCAKCA SVAAKMHGRF LGSQGLLQRP YVHSMLAIAA 960 VCVCVCLFFR GAPDIGLVAP FKWENLNYGT I*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MEEVGAQVAA PIFIHEALSS RYCDMTSMAK KHDLSYQSPN SQLQQHQFLQ ASREKNWNSK  60
AWDWDSVGFV AKPSVAAETL RLGTVSREPK KKDKSDSKNK SNSVNEDDDG LGLNLGGSLT  120
SVEEPVSRPN KRVRSGSPGN GSYPMCQVDN CKEDLSKAKD YHRRHKVCQV HSKATKALVG  180
KQMQRFCQQC SRFHPLTEFD EGKRSCRRRL AGHNRRRRKT QPEDVTSRLL LPGNPDMNNN  240
GNLDIVNLLT ALARSQASAP DALAILSQRS SQSSDNDKSK LPGPNQVTVP HLQKRSNVEF  300
PAVGVERISR CYESPAEDSD YQIQESRPNL PLQLFSSSPE NESRQKPASS GKYFSSDSSN  360
PIEERSPSSS PPVVQKLFPL QSTAETMKSE KMSVSREVNA NVEGDRSHGC VLPLELFRGP  420
NREPDHSSFQ SFPYRGGYTS SSGSDHSPSS QNSDPQDRTG RIIFKLFDKD PSHFPGTLRT  480
KIYNWLSNSP SEMESYIRPG CVVLSVYLSM PSASWEQLER NLLQLVDSLV QDSDSDLWRS  540
GRFLLNTGRQ LASHKDGKVR LCKSWRTWSS PELILVSPVA VIGGQETSLQ LKGRNLTGPG  600
TKIHCTYMGG YTSKEVTDSS SPGSMYDEIN VGGFKIHGPS PSILGRCFIE VENGFKGNSF  660
PVIIADASIC KELRLLESEF DENAVVSNIV SEEQTRDLGR PRSREEVMHF LNELGWLFQR  720
KSMPSMHEAP DYSLNRFKFL LIFSVERDYC VLVKTILDML VERNTCRDEL SKEHLEMLYE  780
IQLLNRSVKR RCRKMADLLI HYSIIGGDNS SRTYIFPPNV GGPGGITPLH LAACASGSDG  840
LVDALTNDPH EIGLSCWNSV LDANGLSPYA YAVMTKNHSY NLLVARKLAD KRNGQISVAI  900
GNEIEQAALE QEHVTISQFQ RERKSCAKCA SVAAKMHGRF LGSQGLLQRP YVHSMLAIAA  960
VCVCVCLFFR GAPDIGLVAP FKWENLNYGT I*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	136	219	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269\|PubMed:15703061}.

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	25215497	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.002G002400.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450223.1	0.0	squamosa promoter-binding-like protein 14 isoform X2
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A2K2BB76	0.0	A0A2K2BB76_POPTR; Uncharacterized protein
STRING	POPTR_0002s00440.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Potri.002G002400.4

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]