PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G409500.1
Common NamePOPTR_0001s44090g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 584aa    MW: 64943.1 Da    PI: 6.0119
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G409500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.81.4e-1292135821373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+a++  + ++ ++l ++ +  +s +g+p+qRl ay+ e+L ar  +s+ ++y++l+++e +    ++ l+++++++e++P+l
  Potri.001G409500.1 213 LKQLLIACAKALAVYNVSAFDNLTEKARSVVSISGEPIQRLGAYLIEGLVARKESSGANIYRTLKCREPE---GKDLLSYMHILYEICPYL 300
                         689******************************************************************9...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le++++rL+ + e++++p+ef+ 
  Potri.001G409500.1 301 KFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLEAVARRLSAISEKFNIPVEFHG 391
                         ***********************************************************999999************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v     d++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L+++ks +Pkvv++veqe+++n+++F++rf+e+l+yy a+f+s+
  Potri.001G409500.1 392 -VPVFAPDVTKEMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMIKSFNPKVVTLVEQESNTNTTPFVTRFVETLNYYLAMFESI 481
                         .6888999*********************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +++lpr+ +eri+vE+++l+r+ vnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ +k+llr+++ + y++ e++g+++lgW
  Potri.001G409500.1 482 DVTLPRDRKERISVEQHCLARDMVNVIACEGKERVERHELFRKWKSRFMMAGFQQYPLSTYVNSVIKSLLRTYS-EHYTLVENDGAMLLGW 571
                         **************************************************************************.55************** PP

                GRAS 363 kdrpLvsvSaW 373
                         kdr+L+s+SaW
  Potri.001G409500.1 572 KDRNLISASAW 582
                         *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.611187564IPR005202Transcription factor GRAS
PfamPF035144.7E-127213582IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MESHQYFGYG VTGAGLSYSS SYPSVPSIPN RLFGSLKFDI GNSPSSPFYT EFDCDTYTAT  60
LSDSQECYSS TDNLSGVSPS RNSSLESNSY FNRPSPSVDC RIESLQLFSG GTSSLQDASS  120
SQNIKHALQE LETALMGPDD DDELNTSNAS LGDSSTPQTS DQKPRAWRQG SHVIQNQTSF  180
VSRQRQLGEG AHVEKRQKSM EEVPLHGIPP GDLKQLLIAC AKALAVYNVS AFDNLTEKAR  240
SVVSISGEPI QRLGAYLIEG LVARKESSGA NIYRTLKCRE PEGKDLLSYM HILYEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPH VRITGIDDPV  360
SKYARGDGLE AVARRLSAIS EKFNIPVEFH GVPVFAPDVT KEMLDVRPGE ALAVNFPLQL  420
HHTPDESVDV NNPRDGLLRM IKSFNPKVVT LVEQESNTNT TPFVTRFVET LNYYLAMFES  480
IDVTLPRDRK ERISVEQHCL ARDMVNVIAC EGKERVERHE LFRKWKSRFM MAGFQQYPLS  540
TYVNSVIKSL LRTYSEHYTL VENDGAMLLG WKDRNLISAS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6022058225377Protein SCARECROW
5b3h_D2e-6022058225377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.21850.0stem
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G409500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024448898.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2K2CBN90.0A0A2K2CBN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s44090.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Representative plantOGRP8948915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-179GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]