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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G386900.1 | ||||||||
Common Name | POPTR_0001s39520g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | BES1 | ||||||||
Protein Properties | Length: 329aa MW: 35334.4 Da PI: 8.4827 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 214.3 | 3e-66 | 2 | 145 | 1 | 150 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 ++++r ptwkErEnnkrRERrRRaiaaki++GLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGtt+rkg+kp e++++ g sa++sp+ Potri.001G386900.1 2 TSGTRLPTWKERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTFRKGCKPVERMDILGVSATTSPC 92 5899*************************************************************************************** PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa..asllpvlsvlslvsssl 150 ss++ +sp++sy++sp sssfpsp+s++ + +a+ +sl+p+l++ls++sss+ Potri.001G386900.1 93 SSYH--------PSPCASYNPSPGSSSFPSPASSSYAANANMdcNSLIPWLKNLSSASSSA 145 ****........******************99888776665567**********9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 9.8E-66 | 3 | 139 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FSGLRMYGNY KLPKHCDNNE VLKALCNEAG 60 WTVEPDGTTF RKGCKPVERM DILGVSATTS PCSSYHPSPC ASYNPSPGSS SFPSPASSSY 120 AANANMDCNS LIPWLKNLSS ASSSASSSKF PHLYIHGGSI SAPVTPPLSS PTARTARIKA 180 DWEDQSIRPG WGGQHYSFLP SSTPPSPGRQ IVPDPEWFRG VRMPQGGPTS PTFSLVASNP 240 FGFKEEAFGG GGSNGGSRMW TPGQSGTCSP AIAAGSDHTA DIPMAEISDE FAFRCNATGL 300 VKPWEGERIH EECGSDDLEL TLGNSRTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-22 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-22 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-22 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-22 | 6 | 77 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.2947 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G386900.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF145433 | 0.0 | EF145433.1 Populus trichocarpa clone WS01124_K11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024456812.1 | 0.0 | BES1/BZR1 homolog protein 4 isoform X1 | ||||
Refseq | XP_024456815.1 | 0.0 | BES1/BZR1 homolog protein 4 isoform X2 | ||||
Swissprot | Q9ZV88 | 1e-139 | BEH4_ARATH; BES1/BZR1 homolog protein 4 | ||||
TrEMBL | A0A2K2CAH8 | 0.0 | A0A2K2CAH8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s39520.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2661 | 33 | 75 | Representative plant | OGRP1595 | 15 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 1e-118 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G386900.1 |
Entrez Gene | 18095445 |
Publications ? help Back to Top | |||
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