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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.001G347200.1 |
| Common Name | POPTR_0001s35140g |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
MYB |
| Protein Properties |
Length: 451aa MW: 50935.7 Da PI: 6.0138 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.001G347200.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.2 | 6.9e-17 | 212 | 258 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT++Ed llv+ vkq+G + W+ Ia+++ gR +kqc++rw+++l
Potri.001G347200.1 212 KGQWTPQEDRLLVQSVKQYGIKKWSQIAKMLE-GRVGKQCRERWHNHL 258
799*****************************.*************97 PP
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| 2 | Myb_DNA-binding | 57.7 | 2.8e-18 | 264 | 306 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+++W++eEdell++a+++ G++ W+ Ia++++ gRt++ +k++w+
Potri.001G347200.1 264 KDAWSEEEDELLINAHREIGNR-WAEIAKRLP-GRTENTIKNHWN 306
679*******************.*********.***********8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:1904095 | Biological Process | negative regulation of endosperm development |
| GO:2000692 | Biological Process | negative regulation of seed maturation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 451 aa
Download sequence Send
to blast |
MELNTMLIDE FPFLSSLLSE YNLNPEGTND FSLEEALSSK GLFYNFHHLG YGHPTNIIPP 60
YLDLDHFTIE GSSQNPFSGI SGTCIDPARL DSLASGFSSH DLNAYTPTVV PLLPAGCGDR 120
LLHGLQRGSV RDHDYQKISG ARSLNQKEMK EQRGFEEIGR TRTANNGVST DEASCVSTED 180
SKHHKQVDHH RKAKKLLLEK DSKVHKKSQV IKGQWTPQED RLLVQSVKQY GIKKWSQIAK 240
MLEGRVGKQC RERWHNHLRP DIKKDAWSEE EDELLINAHR EIGNRWAEIA KRLPGRTENT 300
IKNHWNATKR RQFSRRESGK DLDSKSTLLQ SYIMMVTSSS STQENNEEEK TDDVNSNSPN 360
QNESPGSSST DLEIPYGHGH NNEASKLSFD TNLFNDSYGF MSFLEEMPCS CVVDESNMEF 420
EISGLDSLMK GAEVKKEMDL LEMITQGISH *
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