PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G326000.1
Common NamePOPTR_0001s33360g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 680aa    MW: 75034.6 Da    PI: 5.4686
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G326000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS445.82.9e-1363156782374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevsP 89 
                          +lLl+cAeavs++d  la+++L +l+  +sp gd+mqR+a++fteAL+arla    + ++++++ + s+ +  ns e l++++++++++P
  Potri.001G326000.1 315 LNLLLACAEAVSNEDYMLARRYLHHLNRVVSPLGDSMQRVASCFTEALSARLAAtltTKPSTSSSKAFSPFP-PNSMEILKIYQILYQACP 404
                         689**************************************************9321222333333333333.4599************** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                         ++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs    s e+++etg+ L+++A++l+vpfe+++
  Potri.001G326000.1 405 YVKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----SMENVRETGRCLTELAHSLHVPFEYHP 491
                         ************************************************************....*************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          va++l dl++++++ + gEalaVn+v +lhr++    +l     ++L ++++  P++v+vveqea+hn++ Fl rfleal+yysa+fdsl
  Potri.001G326000.1 492 -VAEELVDLKPHMFNRRVGEALAVNSVNRLHRVP--GNCLG----NLLAMIRDQAPNIVTVVEQEASHNGPYFLGRFLEALHYYSAIFDSL 575
                         .7*******************************9..44444....5********************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++++p++s++r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW
  Potri.001G326000.1 576 DSTFPPDSSQRAKVEQYIFAPEIRNIVACEGAERFERHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLGW 666
                         ******************************************************************************************* PP

                GRAS 363 kdrpLvsvSaWr 374
                         +dr+++++SaWr
  Potri.001G326000.1 667 QDRAILAASAWR 678
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.204288658IPR005202Transcription factor GRAS
PfamPF035141.0E-133315678IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MINALCGSMG SLKSENSCNK LQPTSPNESS SVTESKKTTQ SFEFEQNSLT PTSLNLPAVK  60
FELDGDVEVQ SPDSSMWESF FTDNFDSDFM ISSPVRNLPS PQTSSYNHNY AHAMQGQSLS  120
GCSPPRYLSQ LGAAFSSIHK GKGQSPLHRM CNSPNNQFMQ VESLSLPGIE DFLDDFQRDG  180
YGEGYQQPPK MSGSSGSSTQ LFDMSTTVPA MLDCLTIQNP SRFCSGSVSE TSSGSPMTQE  240
SDIFQMGSIG IAPSSQKLLQ ENQQQPQPLP QPTTQPQPPP TTQSLQQQPQ SLNHTLMVSL  300
PIGSEQEQDS GLQLLNLLLA CAEAVSNEDY MLARRYLHHL NRVVSPLGDS MQRVASCFTE  360
ALSARLAATL TTKPSTSSSK AFSPFPPNSM EILKIYQILY QACPYVKFAH FTANQAIFEA  420
FETEERVHVI DLDILQGYQW PAFMQALAAR PGGAPFLRIT GVGSSMENVR ETGRCLTELA  480
HSLHVPFEYH PVAEELVDLK PHMFNRRVGE ALAVNSVNRL HRVPGNCLGN LLAMIRDQAP  540
NIVTVVEQEA SHNGPYFLGR FLEALHYYSA IFDSLDSTFP PDSSQRAKVE QYIFAPEIRN  600
IVACEGAERF ERHERLEKWR KLMEGKGFKG VPLSANAVTQ SKILLGLYSC DGYRLTEDKG  660
CLLLGWQDRA ILAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-993026777378Protein SCARECROW
5b3h_A3e-993026776377Protein SCARECROW
5b3h_D3e-993026776377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G326000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298647.10.0scarecrow-like protein 21
RefseqXP_024438917.10.0scarecrow-like protein 21
RefseqXP_024438924.10.0scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLB9GF630.0B9GF63_POPTR; Uncharacterized protein
STRINGPOPTR_0001s33360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-93RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]