PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 245aa MW: 26529.3 Da PI: 9.6959

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G300200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.8e-19	7	52	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll+++v ++G+++W+ Iar ++ gR++k+c++rw + Potri.001G300200.1 7 KGPWSPEEDALLKHLVIKHGPRSWTMIARAVP-GRSGKSCRLRWCNQ 52 79****************************.*********985 PP
2	Myb_DNA-binding	49.8	7.6e-16	61	102	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T eEd ++++a+ ++G++ W++Iar + gRt++ +k++w++ Potri.001G300200.1 61 AFTREEDVIIINAHIKYGNK-WAAIARLLD-GRTDNAIKNHWNS 102 79****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	27.452	1	57	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-30	4	100	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-16	6	55	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-17	7	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-24	8	60	IPR009057	Homeodomain-like
CDD	cd00167	7.67E-16	9	51	No hit	No description
SMART	SM00717	1.3E-13	58	106	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.487	59	108	IPR017930	Myb domain
Pfam	PF00249	2.7E-13	61	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-20	61	107	IPR009057	Homeodomain-like
CDD	cd00167	8.92E-12	61	104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDCDRVKGPW SPEEDALLKH LVIKHGPRSW TMIARAVPGR SGKSCRLRWC NQLSPVVEHR 60 AFTREEDVII INAHIKYGNK WAAIARLLDG RTDNAIKNHW NSKLKRKYAD FIVHGGMVNE 120 DGVKDKSAKT VSSSSVLERA NTPSGSEVSD AGLPGTSSLL VQENVPVVES GISNNADVST 180 ELTLSVPGMK SGQLGRDHGV GNKGLLTGDA EKTMTFGPKL LAVMQEMIRK EVRDYMVGIG 240 GKSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-36	4	107	4	107	B-MYB
1gv2_A	2e-36	6	107	3	104	MYB PROTO-ONCOGENE PROTEIN
1h88_C	7e-36	6	107	57	158	MYB PROTO-ONCOGENE PROTEIN
1h89_C	7e-36	6	107	57	158	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-36	6	107	3	104	C-Myb DNA-Binding Domain
1msf_C	2e-36	6	107	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G300200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298748.1	1e-180	transcription factor MYB44
TrEMBL	B9GHS7	1e-179	B9GHS7_POPTR; Uncharacterized protein
STRING	POPTR_0001s30750.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF843	34	124
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-66	myb domain protein 73

Link Out ? help Back to Top
Phytozome	Potri.001G300200.1
Entrez Gene	7465045