PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G273700.1
Common NamePOPTR_0001s28040g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 271aa    MW: 31292.3 Da    PI: 7.1499
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G273700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36251172103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ +++++sw ++++sfvv+ + ef++++Lp+yFkh+nf+SFvRQLn+YgFkkv  ++         weF++++F+kg k+
  Potri.001G273700.1  25 FLTKTYQLVDDPLTDHIVSWGDDETSFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKH 106
                         9****************************************************************999.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  Potri.001G273700.1 107 LLSEIHRRKTS 117
                         ********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3816108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.12E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.6E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAFTVDRCEE MVFTVESQKA VPAPFLTKTY QLVDDPLTDH IVSWGDDETS FVVWRPPEFS  60
RDLLPNYFKH NNFSSFVRQL NTYGFKKVVA DRWEFANEYF RKGAKHLLSE IHRRKTSQHH  120
HQHYPEQPPQ FFQPEDGFSW IDPPFQSPKS STDILTALSE DNQRLRRKNC MLLSELSHMK  180
NLYNDIIYFI QNHVKPMPYE QKAYNAAPKL IELGSSCQDQ TICSSIQRAK NGTVLGQHSL  240
TLSTEESTSP VKLFGVPLSG NKRLHPEVID *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A9e-222111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G273700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140080.0KP014008.1 Populus simonii heat shock transcription factor B4a (HsfB4a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298460.10.0heat stress transcription factor B-4b
SwissprotQ9C6351e-89HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLB9GG640.0B9GG64_POPTR; HSF family protein
STRINGPOPTR_0001s28040.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-83heat shock transcription factor B4