PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G268200.2
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 321aa    MW: 36163.2 Da    PI: 7.9427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G268200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06326226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k++lC+ffa  G C  G+ C F+H+
  Potri.001G268200.2  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                        99****6666.*************5 PP
2zf-CCCH26.31.3e-083454526
                        --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                        +C f+++ G+C+yG+rC++ H+
  Potri.001G268200.2 34 ICTFYQK-GICSYGSRCRYEHV 54
                        7******.***********997 PP
3zf-CCCH21.44.5e-07101123326
                         S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                         +++C+ fa+ G C++Gd+C+ +Hg
  Potri.001G268200.2 101 RSICS-FAAAGSCPRGDKCPHIHG 123
                         67899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3942956IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-53253IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.05698125IPR000571Zinc finger, CCCH-type
SMARTSM003560.002299124IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4101123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4103123IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.03E-9160231No hitNo description
Gene3DG3DSA:3.30.40.103.5E-10162226IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00306166226No hitNo description
PROSITE profilePS5008912.297167225IPR001841Zinc finger, RING-type
PfamPF000973.1E-7167224IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.9E-7167224IPR001841Zinc finger, RING-type
PROSITE patternPS005180191200IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.582254283IPR000571Zinc finger, CCCH-type
SMARTSM003560.13254282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTFYQK GICSYGSRCR YEHVKPSRPE  60
STASSSLTVP CQPLGSNSSA QHDFLEDGEV IEPRNVKPAD RSICSFAAAG SCPRGDKCPH  120
IHGDLCAYCG KHCLHPFRPE ERDEHLKACE KKQKNLDLLK YSQEIECSVC LDRVLSKPTA  180
AERKFGLLSE CDHPFCISCI RNWRSSSPTS GMDVNTSLRA CPICRKLSYF VIPSVIWYSS  240
KEEKQEIVDT YKAKLRSIDC KHFDFGNGNC PFGTSCFYKH AYRDGRLEEV VLRHLGTDDG  300
QTVIAKNIWL SDFLGSLQIR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G268200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1442390.0EF144239.1 Populus trichocarpa clone PX0011_J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441871.10.0putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_024441875.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-170C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K2C4A40.0A0A2K2C4A4_POPTR; C3H family protein
STRINGPOPTR_0009s06730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-168C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]