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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Potri.001G218800.1 |
| Common Name | POPTR_0001s22630g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
NAC |
| Protein Properties |
Length: 247aa MW: 27872 Da PI: 5.712 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.001G218800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 145.1 | 3.7e-45 | 4 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lp G+rF Pt+eel+++yL++k+ g + +l++vi+++ iy++ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkat
Potri.001G218800.1 4 LPLGYRFYPTEEELISFYLHNKLGGGRqERLQRVIPDISIYDIEPWDLPKlsgeLCQGDTEQWFFFTPRQEREARGGRPNRTTASGYWKAT 94
699********************99993445667***************656754455777****************************** PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g+ v+s++++++glkkt+vfy+g+ap+g+kt+W m+eyr+
Potri.001G218800.1 95 GSPGYVYSSDNRVIGLKKTMVFYTGKAPRGRKTKWKMNEYRA 136
****************************************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 247 aa
Download sequence Send
to blast |
MEELPLGYRF YPTEEELISF YLHNKLGGGR QERLQRVIPD ISIYDIEPWD LPKLSGELCQ 60
GDTEQWFFFT PRQEREARGG RPNRTTASGY WKATGSPGYV YSSDNRVIGL KKTMVFYTGK 120
APRGRKTKWK MNEYRAIEVH ESSSNATPKL RHEFSLCRVY VVSGSFRAFD RRPLEAVTRE 180
TQLLGDGATT SAQGPDPTVD MTSSPETSYS VEDHVDHPGT AASANWGSVD GLEPPAWEWP 240
GQLDWP*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 2e-36 | 4 | 160 | 17 | 163 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_B | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_C | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 3swm_D | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_A | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_B | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_C | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 3swp_D | 2e-36 | 4 | 160 | 20 | 166 | NAC domain-containing protein 19 |
| 4dul_A | 2e-36 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
| 4dul_B | 2e-36 | 4 | 160 | 17 | 163 | NAC domain-containing protein 19 |
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