PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G201600.2
Common NamePOPTR_0001s20880g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 670aa    MW: 77239 Da    PI: 5.9613
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G201600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.33.8e-2159141290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fYn YAk+ G+ +r+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++++w+++++eleHnH ++
  Potri.001G201600.2  59 FYNCYAKQQGYGIRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMENKRWKIIEVELEHNHLIT 141
                         9***************99997.66779**************99888.....***********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-1859141IPR004330FAR1 DNA binding domain
PfamPF105515.3E-24262348IPR018289MULE transposase domain
PROSITE profilePS509669.198549585IPR007527Zinc finger, SWIM-type
PfamPF044346.1E-5556582IPR007527Zinc finger, SWIM-type
SMARTSM005758.6E-6560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MEEECLNTES VGNDDAADEC GIEGDCAMTE YVNQTGVIEN PLPPSVGMEF ESYEDVYYFY  60
NCYAKQQGYG IRVSNTWYRK SKERYRGKLS CSSAGFKKKS EANRPRPETR TGCPAMVKFR  120
LMENKRWKII EVELEHNHLI TPGSGKFYKS HKIIGPGTKR TLQLDGPEEV QKIKLFRTVI  180
VDAEGNGGVD TDGGQFGNDV LLPSQLKLKE GDAQAVQSFF FRLQLMDPNF FYVVELNEKG  240
YMRNLFWTDA RSRAAYGYFC DVIAIDTMCL TYKFEVPLVA FIGVNHHGQP ILLGCGMLAD  300
ETTESYTWLL RAWLTCMLGR PPQAIITDHH KTLQTAVADV FPRASHCFYL SRIVQRIPET  360
LGELFDFEAI KVSLSKVVYC FLRPEEFEAA WEEMTQHHGI RDHKWIQTLY EDRKRWVPAY  420
LKETFLAGML PLQQNETAAS FFEGYLDRHT SLKEFMDNYD QALQANRQLE SLADMDSRNS  480
SFMLKSRCFF ELQLSKLYTN EIQRRFEREV EGMYSCFSTT QAHVDGQVMT YLVKEEVEVE  540
GSKRETRDFE VMYNASEMDV LCVCGLFNFS GFLCRHALSV LNQNGLEEIP PQYILTRWRK  600
DMKRSYVLDH SCRGIDINNP IHRYDHLYKC IVRVVEEGRK SQDCSKATQQ ALADMLSKLH  660
LVEDRPPAM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G201600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369303.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
RefseqXP_024437615.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_024437619.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_024437631.10.0protein FAR1-RELATED SEQUENCE 6 isoform X2
TrEMBLA0A3N7FTN70.0A0A3N7FTN7_POPTR; Uncharacterized protein
TrEMBLU5GWD60.0U5GWD6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s20880.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6