PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G201600.1 | ||||||||
Common Name | POPTR_0001s20880g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 670aa MW: 77239 Da PI: 5.9613 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.3 | 3.8e-21 | 59 | 141 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ G+ +r+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+++++eleHnH ++ Potri.001G201600.1 59 FYNCYAKQQGYGIRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMVKFRLMENKRWKIIEVELEHNHLIT 141 9***************99997.66779**************99888.....***********************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-18 | 59 | 141 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.3E-24 | 262 | 348 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.198 | 549 | 585 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.1E-5 | 556 | 582 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.6E-6 | 560 | 587 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MEEECLNTES VGNDDAADEC GIEGDCAMTE YVNQTGVIEN PLPPSVGMEF ESYEDVYYFY 60 NCYAKQQGYG IRVSNTWYRK SKERYRGKLS CSSAGFKKKS EANRPRPETR TGCPAMVKFR 120 LMENKRWKII EVELEHNHLI TPGSGKFYKS HKIIGPGTKR TLQLDGPEEV QKIKLFRTVI 180 VDAEGNGGVD TDGGQFGNDV LLPSQLKLKE GDAQAVQSFF FRLQLMDPNF FYVVELNEKG 240 YMRNLFWTDA RSRAAYGYFC DVIAIDTMCL TYKFEVPLVA FIGVNHHGQP ILLGCGMLAD 300 ETTESYTWLL RAWLTCMLGR PPQAIITDHH KTLQTAVADV FPRASHCFYL SRIVQRIPET 360 LGELFDFEAI KVSLSKVVYC FLRPEEFEAA WEEMTQHHGI RDHKWIQTLY EDRKRWVPAY 420 LKETFLAGML PLQQNETAAS FFEGYLDRHT SLKEFMDNYD QALQANRQLE SLADMDSRNS 480 SFMLKSRCFF ELQLSKLYTN EIQRRFEREV EGMYSCFSTT QAHVDGQVMT YLVKEEVEVE 540 GSKRETRDFE VMYNASEMDV LCVCGLFNFS GFLCRHALSV LNQNGLEEIP PQYILTRWRK 600 DMKRSYVLDH SCRGIDINNP IHRYDHLYKC IVRVVEEGRK SQDCSKATQQ ALADMLSKLH 660 LVEDRPPAM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G201600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006369303.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
Refseq | XP_024437615.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X1 | ||||
Refseq | XP_024437619.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X1 | ||||
Refseq | XP_024437631.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 isoform X2 | ||||
TrEMBL | A0A3N7FTN7 | 0.0 | A0A3N7FTN7_POPTR; Uncharacterized protein | ||||
TrEMBL | U5GWD6 | 0.0 | U5GWD6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s20880.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G201600.1 |
Entrez Gene | 18094865 |