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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G188500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 201aa MW: 22207 Da PI: 9.4158 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.6 | 3.5e-18 | 116 | 150 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ kTp+WR gp g+ktLCnaCG++y++ +l Potri.001G188500.2 116 CLHCGAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 150 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.2E-70 | 1 | 199 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 1.6E-17 | 110 | 160 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-15 | 114 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.4E-15 | 114 | 148 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 11.464 | 114 | 146 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.17E-12 | 115 | 162 | No hit | No description |
Pfam | PF00320 | 8.3E-16 | 116 | 150 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 116 | 141 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MAELEWLSNF VEDSFSTDQS LQTNIHILSG SKPPTPESSS SETHHPEPIT CNPSNPAFQP 60 ETPLPGKARS KRSRAAPCDW STRLLHVPST TKMSSEKQLR ESPDPNLDSN AMVRRCLHCG 120 AEKTPQWRTG PMGPKTLCNA CGVRYKSGRL VPEYRPAASP TFVSAKHSNS HRKVLELRRQ 180 KEVQGAQQQQ FLSQSSIFGV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G188500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046757.1 | 1e-143 | PREDICTED: GATA transcription factor 9-like | ||||
Swissprot | O82632 | 5e-64 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | A0A2K2C007 | 1e-146 | A0A2K2C007_POPTR; Uncharacterized protein | ||||
STRING | XP_002515981.1 | 1e-102 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 2e-61 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G188500.2 |
Publications ? help Back to Top | |||
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