PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G185900.2
Common NamePOPTR_0001s18660g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 298aa    MW: 32211.7 Da    PI: 5.8727
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G185900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.00081932311255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ +++  L +++ +      +K + a++L +A+ YI+ Lq
  Potri.001G185900.2 193 RKEKLGDRITVLHQMVSPF-----GKTDTASVLLEAIGYIRFLQ 231
                         5566777888888888877.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.16181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-10191243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-5191235No hitNo description
Gene3DG3DSA:4.10.280.101.2E-6191239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMAGNPSWWS MHPPSQQTSA LLSSSPSIFP SQYVFGSSSF SSNPLPDNQE LPLSWSQLLL  60
GGSSGDEDRY GMSQFQAKRL ENWEDQILNP SPSISVVADV KQEVSHNSNL YGHGDEDFQA  120
LRSPAWPQVM PGSSPRSCVT SISSTNILDF SYNKADGANQ HPDQSSECNS TATGGVCKKA  180
RVQPSSSQPL KVRKEKLGDR ITVLHQMVSP FGKTDTASVL LEAIGYIRFL QGQIEALSSP  240
YLGTASPNMR NHQQSDNQDN PKDLRSRGLC LVPLSCTQHV GSDNGADYWA PAMGGGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G185900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299721.10.0transcription factor bHLH68 isoform X4
SwissprotQ8S3D14e-59BH068_ARATH; Transcription factor bHLH68
TrEMBLB9GG530.0B9GG53_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18660.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]