PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G179800.1
Common NamePOPTR_0001s18000g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 335aa    MW: 38374.2 Da    PI: 4.6984
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G179800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.52e-14103187286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         Wt++e+ +L++a  e+  + ++++l+   W+ev++k+  + ++er+ +qC+++++ l+k+yk ++    +   +  s+++yf++++
  Potri.001G179800.1 103 WTEHETFVLLDAWGEKFLQRGKKSLRSDEWQEVAEKVsDKSKIERTDTQCRNRLDTLKKKYKIERIKLAED-GGGASKWVYFKKMD 187
                         *************************************667789*******************999999986.667779*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-48289IPR009057Homeodomain-like
PfamPF138371.3E-21102188No hitNo description
PROSITE profilePS500906.481103160IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.8E-4128173IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDDTEDDARY PQNPYGENNQ RSYGSNRHKL PVGNATYSRP VDNQYAVSED EDSDDEEEGE  60
HEGIDDDHED DDIERHPKKR KLKSLVSSYE FAPLGGRNPL TDWTEHETFV LLDAWGEKFL  120
QRGKKSLRSD EWQEVAEKVS DKSKIERTDT QCRNRLDTLK KKYKIERIKL AEDGGGASKW  180
VYFKKMDVLM STSAQQGGLS CGMDSGEYVS MNPRVYSNHS NGFDEMRDSP GNSELARDED  240
DSDGLPPKKR RLGRDCIEQS PFGLLADSIH KFSEIYEKIE SSKRQQMLEL EKMRMDFQRD  300
LEMQKRQIIE RAQAAIAKIH QVGEEEDSIS ANSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G179800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2247870.0CU224787.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002690.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A3N7FTG40.0A0A3N7FTG4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s18000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24413480
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.12e-71Trihelix family protein