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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G173600.1 | ||||||||
Common Name | POPTR_0001s17350g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | CPP | ||||||||
Protein Properties | Length: 782aa MW: 86609 Da PI: 6.8475 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 48.2 | 2.1e-15 | 440 | 478 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++CnCkks+Clk+YCeCfaag +C ++C+C +C Nk e Potri.001G173600.1 440 CRRCNCKKSRCLKLYCECFAAGIYCLDTCSCVNCINKPE 478 789*********************************976 PP | |||||||
2 | TCR | 42 | 1.9e-13 | 526 | 564 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++kkgCnCkkskC kkYCeCf+ g+ C + C+Ce+C N Potri.001G173600.1 526 RHKKGCNCKKSKCSKKYCECFQGGVGCCNGCRCEGCYNP 564 589**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.0E-16 | 438 | 479 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 32.825 | 439 | 566 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.6E-11 | 441 | 476 | IPR005172 | CRC domain |
SMART | SM01114 | 3.6E-13 | 526 | 567 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 5.6E-9 | 528 | 563 | IPR005172 | CRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 782 aa Download sequence Send to blast |
MPGSDVYRQS DIQPKPQLMP CFQKEVQSYS SSGCIDEHLA DPFKEDNIMN SSMSSLTSHK 60 ETTTKADDTN AGNGKATVLM SDQTGEELPS VSMNVFDATA REKETERFGE FLQCLSGNVD 120 DHVESDIFGG TFFGEQHHEL FSPQRDGAYK YSKESLGSLS KESVKEADQR HRGIRRHLHF 180 GAAISCKHAG NGTHETANLC LPGRQTDFES LVPPHVETRG ISGIWQARSC SQTATLWSSF 240 SPSACESVKS AQNYGNRAVS ACIPSGGDLH LNSFVRSESV GSEFSTSKKL GSNLHQQEEK 300 LMSDRDHYLC KEIDGIPVLS FLGEIYSHLG YEQQESQAAA GAGSSSYQSS SIMQPPCDSL 360 HLIPYEQQAS LCKGTMPSSE YADIVELNQM SPERNRWNTL MFFIQTFRLS VIPFQVAYVL 420 YLLVMLIRKK AKYTIKSEGC RRCNCKKSRC LKLYCECFAA GIYCLDTCSC VNCINKPEYE 480 DTVLDMRQQT EARNPLAFAP KVVNNATNSP ANMMEEGKWM KTSSSRHKKG CNCKKSKCSK 540 KYCECFQGGV GCCNGCRCEG CYNPYGNKTE TSYRRAERWN NPSREQLDTL ESHNDCIKAE 600 RPNQFSSTWE ELADIGHLTP PSHCLLGAVA SSGSLNIRDC SKQFLGQSQQ ESSVLSPSGY 660 LNWHHSPSSL TPKLYGCEAL PELSSDSFFC NMMEDATPET LKNTCTPSTE GVKSCSPNQK 720 WVSPPKIRSH ELRSSSSQGL RSGCKFILQD LPSFPPLTPY SKSQAAIHQN DGDHKASTGY 780 Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-13 | 443 | 563 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-13 | 443 | 563 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G173600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024462225.1 | 0.0 | uncharacterized protein LOC7490966 | ||||
TrEMBL | A0A3N7ECK3 | 0.0 | A0A3N7ECK3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s17350.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 2e-41 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G173600.1 |
Entrez Gene | 7490966 |