PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G170200.1
Common NamePOPTR_0001s17020g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 662aa    MW: 72990.7 Da    PI: 7.9905
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G170200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.6e-09546594348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +lv++v ++G g+W+ I r        Rt  ++k++w+++l
  Potri.001G170200.1 546 AWTLSEVMKLVEGVSRYGAGRWSEIKRLAFasySYRTSVDLKDKWRNLL 594
                         7****************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.225539598IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-13541600IPR009057Homeodomain-like
SMARTSM007172.9E-9543596IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-16545604IPR009057Homeodomain-like
CDDcd116604.22E-19545595No hitNo description
PfamPF002498.0E-7546594IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
METEVGVEGN DEAKHKECGI RKSSSSLSSP KQISDPVVYK LVRVEGDGRL VPATDDELME  60
VESLLIDDRC GKHVVADPGQ TVGCISNEGS SSGMAQLKRL EGWSQPENKK VDPDKLNGRL  120
EYIEEMLQKV KEEERLYIAC GSPDCSSAYV IVDSQCSDPH DKLLHIDEKL QCEIPLQEPV  180
PLLAPSLSES HLNQSGSVGE CSHPPDELVA GGSPSSITTK PDFSRLKGEI CLDNLSIKEL  240
HETFKATFGR ETTVKDKQWL KRRISMGLTN SCDVSTTSFI IKGNKFVKKG NEEGCNGIYG  300
SFAKDPPIVN QKGLPTCHVG QLDYHKVVPE RRLENHNLDD NSGSDDHQKE QRAAKRVRKP  360
TKRYIEELSE VESKESNERL LNLAKNSGHD GLISPKSHVR LVRHVSSGGR TVITRLDSLG  420
GSGIQVPCVS RVRRSRPRKN FMALLKFNPS SMGMAAALVE KALDDHGFPP DDGNENRVLK  480
ASSTPEHVHH QFVGVPEKDK QFSVMSVVGL GNNTDLKCMN SNEDSDDNVV TVPTSKGGIR  540
RKHHRAWTLS EVMKLVEGVS RYGAGRWSEI KRLAFASYSY RTSVDLKDKW RNLLKASFAQ  600
TPPDTGMNSR KNTGAMPIPT PILLKVRELA EMQAQVPPNL SLTKVAGSAR KIVHEKQTGF  660
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432438RRSRPRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G170200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0292441e-158CT029244.1 Poplar cDNA sequences.
GenBankCT0295441e-158CT029544.1 Poplar cDNA sequences.
GenBankCT0295451e-158CT029545.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298100.20.0uncharacterized protein LOC7478109 isoform X2
TrEMBLB9GKV60.0B9GKV6_POPTR; Uncharacterized protein
STRINGPOPTR_0001s17020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-133TRF-like 6