![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.001G155700.1 |
Common Name | POPTR_0001s15550g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ERF |
Protein Properties |
Length: 253aa MW: 28101 Da PI: 6.1648 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.001G155700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Ptr&pid=Potri.001G155700.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 71 | 122 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
+ y+GVr + +g+Wv+eIr p++ + r++lg+f t+e+Aa+a++ a++ ++g+
Potri.001G155700.1 71 PSYRGVRMRQ-WGKWVSEIRQPKK---KSRIWLGTFPTPEMAARAHDVAALTIKGH 122
57*****998.**********854...6***********************99886 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 253 aa
Download sequence Send
to blast |
METSLNIQCD AQTSAFSSSS ITSSFSSFPS PMKNSRKQDQ SQDSSKRNQD PKNNNESNKK 60 AKSGGNAGRH PSYRGVRMRQ WGKWVSEIRQ PKKKSRIWLG TFPTPEMAAR AHDVAALTIK 120 GHSAHLNFPE LAHEFPRPAS SSPKDIQAAA ALAATLSCKT SQKGRETEAE DELMLPHSPD 180 STLASNETQE YSLSSPLRDD GDDTFIDLPD ILQDQYQFDE FCYLSSWQLV GPETSDIGFW 240 HQEEPFGNIP FK*
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EF155927 | 0.0 | EF155927.1 Populus trichocarpa TINY-like protein (TINYL8) gene, complete cds. |