PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G146200.17 | ||||||||
Common Name | POPTR_0001s02910g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | G2-like | ||||||||
Protein Properties | Length: 482aa MW: 53744.5 Da PI: 6.7906 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.3 | 7.1e-28 | 240 | 294 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH++Fv+ave+L G ++A+P++ile+mkv+gLt+++v+SHLQkYR++ Potri.001G146200.17 240 KMKVDWTPELHRKFVQAVEKL-GVDQAIPSRILEVMKVEGLTRHNVASHLQKYRMH 294 5689*****************.********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50110 | 14.444 | 1 | 60 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 2.6E-8 | 13 | 67 | No hit | No description |
SuperFamily | SSF52172 | 2.11E-7 | 14 | 62 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS51294 | 15.73 | 237 | 296 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-27 | 238 | 297 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.42E-18 | 239 | 297 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-25 | 240 | 294 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.1E-8 | 243 | 292 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MSNSSRSFKF LETSKDLPTI MTSSIDCLNT MMKCIALGAV EFLRKPLSED KLRNIWQHVV 60 HKAFNAGGSV QSKSLKPVKD SVVSMLELKD GLEENENKNM EKTENVSQAQ ESNEQQSPAS 120 DKYPAPSTPQ LKQGERLLDD GDCQDHINCL IEKESVEQEG DSKSVETTCA MSEETLQAGD 180 PQSFTETVIK EEDDSTDGVK SENNMCPNSQ NKDTLNHSNG CAEKASSLHN SHGTRANRKK 240 MKVDWTPELH RKFVQAVEKL GVDQAIPSRI LEVMKVEGLT RHNVASHLQK YRMHRRHILP 300 KEDERQWTQH RDQVQRSYYP HKPIMAYPPY HSNHALPPGP VYPMWGATGS HTAGVHMWGP 360 PGYSPWPPTE SCHWKPYPGM HADAWGCPVM PPHNPYSTIP HYASGFQSAS MVNNSCGMPQ 420 KLFDLQPAEE VIDKVVKEAI NKPWLPLPLG LKPPSADSVL AELSRQGVSS IPPRINGSNS 480 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-15 | 245 | 294 | 6 | 55 | Transcription factor LUX |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8470 | 0.0 | bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G146200.17 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT028920 | 0.0 | CT028920.1 Poplar cDNA sequences. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006368445.2 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440369.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440375.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440380.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Refseq | XP_024440382.1 | 0.0 | two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-114 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A2K2BXM6 | 0.0 | A0A2K2BXM6_POPTR; ARR-B family protein | ||||
STRING | POPTR_0001s02910.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-118 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G146200.17 |
Entrez Gene | 18094205 |
Publications ? help Back to Top | |||
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