PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LSD

Protein Properties

Length: 157aa MW: 16144.9 Da PI: 8.2025

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.001G143900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.4e-13	39	63	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Potri.001G143900.1 39 CSGCRNLLLYPVGATSVCCAVCNAV 63 ************************9 PP
2	zf-LSD1	46.6	5.4e-15	78	102	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Potri.001G143900.1 78 CGGCHTLLMYIRGATSVQCSCCHTV 102 ************************9 PP
3	zf-LSD1	40.3	5.2e-13	116	140	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Potri.001G143900.1 116 CGSCRMLLMYRYGARSVKCAVCNFV 140 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-12	36	66	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.6E-10	39	63	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	9.07E-5	39	137	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	9.8E-15	75	104	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.5E-12	78	102	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	6.7E-13	113	141	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.5E-12	116	140	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MPVPLAPYPT PPAPYAPPAP APAPPPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC 60 NAVTAVPPPG TEMAQLVCGG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGSCR 120 MLLMYRYGAR SVKCAVCNFV TPVGVSSSVN ERKFNT*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.10204	1e-164	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.001G143900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU232247	1e-139	CU232247.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006368419.1	1e-106	protein LOL1
Refseq	XP_024465839.1	1e-106	protein LOL1
Refseq	XP_024465846.1	1e-106	protein LOL1
Swissprot	Q93ZB1	1e-78	LOL1_ARATH; Protein LOL1
TrEMBL	U5GN46	1e-105	U5GN46_POPTR; Uncharacterized protein
STRING	POPTR_0001s02650.1	1e-106	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8187	33	46
Representative plant	OGRP1146	17	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	4e-64	lsd one like 1

Link Out ? help Back to Top
Phytozome	Potri.001G143900.1
Entrez Gene	18094183

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]