PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G141100.1
Common NamePOPTR_0001s02350g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 304aa    MW: 34246.3 Da    PI: 8.2194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G141100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-1299150155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N  ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Potri.001G141100.1  99 QRMTHIAVERNRRKLMNGYLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 150
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-1297153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-1197154No hitNo description
SuperFamilySSF474592.36E-1597167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.20898149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-999150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-9104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALEALSSSE FLNFIIYDTI PATPYNCHDS LETAGFLLEN LKPQDHGVSV NSSSLMTQQR  60
CSMGREATNR RQNLLAVQGK KKRRRKPRVC KNREEAETQR MTHIAVERNR RKLMNGYLAV  120
LRSLMPESYV QRGDQASIVG GAIEFVKELE HLLQSLEARK LKLHQGLTGP DYDIEDATET  180
SEFPPPPFAQ FFVYPQYTWS QIPNKFTSKT KASIADIEVN LIETHANLRI LSRRSPRQLS  240
KLVAGFQTLY LTVLHINVTT MDPLVLYSIS AKLEEGCQLT SVDDIAGAVH HMLRIIEEAT  300
ALC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984KKKRRR
27985KKKRRRK
37986KKKRRRKP
48085KKRRRK
599110RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.118720.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:17088607}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G141100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368389.10.0transcription factor bHLH71
SwissprotQ56XR01e-74BH071_ARATH; Transcription factor bHLH71
TrEMBLU5GN120.0U5GN12_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.13e-72beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]