PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G122800.1
Common NamePOPTR_0001s00480g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 778aa    MW: 85702.5 Da    PI: 6.7169
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G122800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS316.55.8e-974157762374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          ++L ++Ae v +g++  aq +Larl+++ sp+g+p++R+a+yf+eAL+  l+ + ++ + a pp++ ++ +++ +++a+k++sevsP+++
  Potri.001G122800.1 415 LDQLCKAAELVGTGNFLHAQGILARLNQQLSPTGKPFHRAAFYFKEALQLLLLMNNNS-VTAPPPRSPTPFDVIFKMSAYKVLSEVSPLIQ 504
                         679*************************************************985555.5567888888899******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f ++t+Nqa+leav+ ++ +Hi+Dfdi+ G+QW++++q+L  R++g  sl+ T+++sp++++  el  ++++L++fA+e+g++fe +v+  
  Potri.001G122800.1 505 FVNFTCNQALLEAVDDADSIHIVDFDIGFGAQWASFMQELP-RNRGVRSLKTTAFASPSTHHPVELGLMRDNLTQFANEIGLSFELDVINF 594
                         ****************************************6.78999*****************************************977 PP

                GRAS 184 krle..dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         ++le  + +l  +r++++Ea++Vn+ +   +   ++ +l+s    +L+++k+lsPk+vv  ++ +d+++ +F +++l+al+ y+ l++sl+
  Potri.001G122800.1 595 DSLEqnCYSLPFFRTNENEAVVVNFPIWCSSN--QPSALPS----LLRFIKQLSPKIVVSLDRGCDRSDLPFPQHILHALQSYVHLLESLD 679
                         75551155777789999*********955544..4555555....*********************************************8 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a   +++++ +k+Er+ll+++i++ v  + ++     e++ +W+  + ++GF+pv++s+++++qa++++++++++g++ve++++ lvl+W+
  Potri.001G122800.1 680 AV-NATTDAVNKIERFLLQPRIESTVLGRLRA----PEKMPNWKTIFASVGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQALLVLCWQ 765
                         87.68999*******************99998....9****************************************************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r+L+s+SaWr
  Potri.001G122800.1 766 RRELMSASAWR 776
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.235388756IPR005202Transcription factor GRAS
PfamPF035142.0E-94415776IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MPFHLQAKGG VDIAGFASIC SQQEAWTHRQ QQQQQQQQQQ QPLQVNSFAS KESTSVLHMR  60
RSQSPPTSVS TLSSSSNGGA GGNTTNITAT DKAVNPVSNE RKDEWATELQ PIPSGLEFVS  120
SGARCGLGLE DWENMLSEPS QEQSFLRWIA GDVDDTQFGL KQLLQSGNNQ LEYDGNADAG  180
AGGGGLGIVD QGHGFESLSG IPCGVSSIGT NLAPFPGPGV SNVGSGLVAP GSFSGLVNYK  240
NVGFGNNNSS VQSPVFSSSS NSVSLPLSLP PGMVYHHNQQ QQIEASEEKP HILDPQVLMN  300
QQQSHNPHAQ NPNLFLPLPF SQQENRPLHS QLKRHNSGGI DPISHVIPKA PFSVPGQEFL  360
LRKHQQQQLG FPQGVQFLHQ QLQQKPLMVK KEDLGVQQQQ QQQQQQQQQQ QHALLDQLCK  420
AAELVGTGNF LHAQGILARL NQQLSPTGKP FHRAAFYFKE ALQLLLLMNN NSVTAPPPRS  480
PTPFDVIFKM SAYKVLSEVS PLIQFVNFTC NQALLEAVDD ADSIHIVDFD IGFGAQWASF  540
MQELPRNRGV RSLKTTAFAS PSTHHPVELG LMRDNLTQFA NEIGLSFELD VINFDSLEQN  600
CYSLPFFRTN ENEAVVVNFP IWCSSNQPSA LPSLLRFIKQ LSPKIVVSLD RGCDRSDLPF  660
PQHILHALQS YVHLLESLDA VNATTDAVNK IERFLLQPRI ESTVLGRLRA PEKMPNWKTI  720
FASVGFSPVT FSNFTETQAE CVVKRTPVRG FHVEKRQALL VLCWQRRELM SASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-3143377622375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G122800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442745.10.0scarecrow-like protein 27 isoform X1
TrEMBLA0A2K2BWH30.0A0A2K2BWH3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s00480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Representative plantOGRP17501242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-123GRAS family protein