PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G109400.1
Common NamePOPTR_0001s08850g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 667aa    MW: 74101.8 Da    PI: 5.7702
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G109400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.92.8e-1292846511374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv+lL++c+ea++ ++ + ++++La+l  lasp+g p+ Rlaay+teALa r++r +++++++ +p+e + +  +++ +al+l+++vsPi+
  Potri.001G109400.1 284 LVSLLTACVEAITLKNIAGINHFLAELGGLASPKGIPISRLAAYYTEALALRVTRLWPHIFHITAPRELD-RVDDDSGTALRLLNQVSPIP 373
                         6899***************************************************************998.5678888999********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+taN+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v
  Potri.001G109400.1 374 KFIHFTANEMLLRAFEGKDRVHIIDFDIKQGLQWPTLFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLAGFAEALNLPFEFHP-V 459
                         **********************************************************....***************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++rled++l++L+vk++E++a+n+v+q+h++l +    +   +++L l++s++P +v+v+eqea+hn++++ +r++++l+yysalfds+++
  Potri.001G109400.1 460 VDRLEDVRLWMLHVKERECVAINCVFQMHKTLYDGSGGA--LRDFLGLIRSTNPAIVIVAEQEAEHNAPNLETRVCNSLKYYSALFDSIDS 548
                         *******************************95543333..589*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee...sgslvlg 361
                         +lp +s  rik+E++  +rei+n+vaceg++r erhe l +W++ +e+ G++ + +se+++ q + ll++++ d y+v+++    ++l+l 
  Potri.001G109400.1 549 SLPFDSPVRIKIEEM-YAREIRNIVACEGSDRHERHEMLDNWKKLMEQGGLRCLVISEREMLQSQILLKMYSCDSYQVKKHgqeGAALTLS 638
                         ***************.89******************************************************999****6544266777** PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W d+pL++vSaW+
  Potri.001G109400.1 639 WLDQPLYTVSAWT 651
                         ************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.638258628IPR005202Transcription factor GRAS
PfamPF035149.5E-127284651IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE SPAQFQACHF QLPSMSTQRL DLPCTFSRKE SSRSQPIRPV  60
GVGLSVDKPL ESKTSSCSLK QNIRLPPLAT SNQSVKDEFW EKGKSLKRFA EQSVDESCIN  120
RAKRKRGNND NVKPDDFCEG GDSLSLGQLG SGNFWFQPSL EVPRGLNPQQ FPFSLTCSGD  180
EERVYFVPSE VISPPLPLSN NPWVGSVITE ITDLGEKDGE SSQRPVKEAS GSSTSSESQS  240
LGLRLSENVV EQEVGNGSRN PHPQEGAAME AAETDQREFQ GFELVSLLTA CVEAITLKNI  300
AGINHFLAEL GGLASPKGIP ISRLAAYYTE ALALRVTRLW PHIFHITAPR ELDRVDDDSG  360
TALRLLNQVS PIPKFIHFTA NEMLLRAFEG KDRVHIIDFD IKQGLQWPTL FQSLASRTNP  420
PSHVRITGIG ESKQELNETG DRLAGFAEAL NLPFEFHPVV DRLEDVRLWM LHVKERECVA  480
INCVFQMHKT LYDGSGGALR DFLGLIRSTN PAIVIVAEQE AEHNAPNLET RVCNSLKYYS  540
ALFDSIDSSL PFDSPVRIKI EEMYAREIRN IVACEGSDRH ERHEMLDNWK KLMEQGGLRC  600
LVISEREMLQ SQILLKMYSC DSYQVKKHGQ EGAALTLSWL DQPLYTVSAW TPLDIAGSSS  660
SFSQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-7129165225379Protein SCARECROW
5b3h_D3e-7129165225379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.117280.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G109400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299559.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLB9GW730.0B9GW73_POPTR; GRAS family protein
STRINGPOPTR_0001s08850.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Representative plantOGRP55071521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein