PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G086400.4 | ||||||||
Common Name | POPTR_0001s11130g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 245aa MW: 26969.2 Da PI: 8.118 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.8e-39 | 37 | 97 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr +PvGgg+rknk+ss Potri.001G086400.4 37 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSS 97 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 29 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-33 | 39 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.817 | 41 | 95 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 43 | 79 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MDTAQWPQEI VVKPIEEIVV NTCSKPPALE RKVRPQKEQA LNCPRCNSTN TKFCYYNNYS 60 LTQPRYFCKT CRRYWTEGGS LRSIPVGGGS RKNKRSSASS SSSSKKLPDL ISPPTLSQTS 120 TENHKIHEGQ DLNLAFPSTQ ALELLTGISS RGLNSFPMPV HQDPSTLYPS GFPLQDFKPT 180 LSFSLDGLGS GYGDLQGVHE TNGRLLFPFE DLKQQVSSTA DIEQNKEHGD STGYWTGMLG 240 GGSW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G086400.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026821.1 | 1e-170 | PREDICTED: dof zinc finger protein DOF4.6 isoform X2 | ||||
Swissprot | Q8LAP8 | 2e-67 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A2K2BUI7 | 0.0 | A0A2K2BUI7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11130.1 | 1e-173 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 4e-51 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G086400.4 |
Entrez Gene | 7477832 |
Publications ? help Back to Top | |||
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