PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G086400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 31392.1 Da PI: 8.2725 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123 | 1e-38 | 41 | 101 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lr +PvGgg+rknk+ss Potri.001G086400.1 41 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRSIPVGGGSRKNKRSS 101 7899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-26 | 33 | 93 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.1E-33 | 43 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.817 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MSAIFFCPYH VLEIVVKPIE EIVVNTCSKP PALERKVRPQ KEQALNCPRC NSTNTKFCYY 60 NNYSLTQPRY FCKTCRRYWT EGGSLRSIPV GGGSRKNKRS SASSSSSSKK LPDLISPPTL 120 SQTSTENHKI HEGQDLNLAF PSTQGIRSFS ELIQFPSINE NNNKTQISSS TSASTNTSQL 180 SALELLTGIS SRGLNSFPMP VHQDPSTLYP SGFPLQDFKP TLSFSLDGLG SGYGDLQGVH 240 ETNGRLLFPF EDLKQQVSST ADIEQNKEHG DSTGYWTGML GGGSW* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}. | |||||
Uniprot | TISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G086400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443920.1 | 0.0 | dof zinc finger protein DOF4.6 | ||||
Swissprot | Q8LAP8 | 1e-65 | DOF46_ARATH; Dof zinc finger protein DOF4.6 | ||||
TrEMBL | A0A3N7FWL4 | 0.0 | A0A3N7FWL4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11130.1 | 1e-164 | (Populus trichocarpa) | ||||
STRING | POPTR_0003s14450.1 | 1e-164 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 2e-49 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G086400.1 |
Publications ? help Back to Top | |||
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