PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G055900.5
Common NamePOPTR_0001s13890g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 436aa    MW: 47925.1 Da    PI: 8.5461
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G055900.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.17.1e-40180255176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC+ dls+ak+yhr+h+vCe hsk+++v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+
  Potri.001G055900.5 180 CCQVEGCNLDLSSAKDYHRKHRVCESHSKCQKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 255
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.1E-32174242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.308178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-37179259IPR004333Transcription factor, SBP-box
PfamPF031104.8E-30181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEWNGKPHLQ WDWESLIMFN GITTENSKQL SPTDLETDGE KGTDSGFFYS SGSASRSGGS  60
SSDLELASFS KCSKSASINS SSAGEVKTSK FTLEASKANP SDYNKKEIGK AKTASMSSTI  120
EAAGGSGDQL LGLKLGKRIY FEDACAGNNV QSSSFSTVPV PSFTSAKKLK STIQSQRAPC  180
CQVEGCNLDL SSAKDYHRKH RVCESHSKCQ KVIVAGLERR FCQQCSRFHG LSEFDEKKKS  240
CRRRLSDHNA RRRKQPGSVH LNSRVSSSLY DERQQMSLAW DRAPLVHARP NANLTWEGTY  300
ISKFTITKDY IAKPAEIGGN DGQFHLPGFD LTNGIDIQHH HKSNSSLPSK GLEEYIIPSK  360
AEAAPESHRA LSLLSNNSWG SREPQSISFE QPVHTNHTTQ SVLQVIPQNS PLASSEYWRT  420
EQPSTDSQVH TLTSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KKKSCRRRLSDHNARRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.27600.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G055900.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464879.10.0squamosa promoter-binding-like protein 2 isoform X2
TrEMBLB9GMK30.0B9GMK3_POPTR; SBP family protein
STRINGPOPTR_0001s13890.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.35e-72squamosa promoter binding protein-like 2