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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.001G023500.1 | ||||||||
Common Name | POPTR_0001s06090g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 477aa MW: 53859.7 Da PI: 6.284 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 456.4 | 1.7e-139 | 49 | 471 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lLl+cA++v++g+ e+a+ L+++s+laspdgd+mqR+aayft +La r+++ +++l kal+p+++s see+ +++lf+e++P+l Potri.001G023500.1 49 LIHLLLACANHVAAGSIENANIGLEQISHLASPDGDTMQRIAAYFTAGLADRILKGWPGLHKALNPKQAS--LISEEILVQRLFFELFPFL 137 689*****************************************************************98..79***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182 k+s++++NqaI ea+ege++vHiiD++ +++QW++Llq+L++Rpegpp+lRiTg+++ +ke le+++ rL++ Ae+l++pf+fn+ + Potri.001G023500.1 138 KLSYVITNQAIIEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-I 223 **********************************************************....9**************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrll........................................................... 214 +++le+l+le+Lrvk+gEalaV++vlqlh+ll Potri.001G023500.1 224 VSKLENLDLENLRVKTGEALAVSSVLQLHTLLamddemhrrnspsgyknpnsnhfqrvqinqnrrtlgdwlerdvvnayssspdsalspls 314 999********************************************************************************99977544 PP GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 + s + ++L++++slsPk++v++eqe++hn+ +++er++eal++y+alfd+le++++r s er+kvE++l+g+ei+n++aceg++ Potri.001G023500.1 315 lAASP----KMGSFLNALRSLSPKLMVITEQESNHNGFNLMERVTEALNFYAALFDCLESTVSRVSLERHKVEKMLFGEEIKNIIACEGTD 401 44444....4566****************************************************************************** PP GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+erhe+lekW rle aGF+ +pls++ qa++ l+ ++ dgy+++ee+g+lv++W+drpL+svSaWr Potri.001G023500.1 402 RKERHEKLEKWILRLELAGFGIIPLSYHGRLQANRFLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWR 471 *********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.382 | 23 | 451 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-137 | 49 | 471 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MAGMAQEEGS SSVTSSPLQF FPWMPLSPGT GSPYPWLREL KSEDRGLCLI HLLLACANHV 60 AAGSIENANI GLEQISHLAS PDGDTMQRIA AYFTAGLADR ILKGWPGLHK ALNPKQASLI 120 SEEILVQRLF FELFPFLKLS YVITNQAIIE AMEGEKMVHI IDLNSFEPAQ WINLLQTLSA 180 RPEGPPHLRI TGIHEQKEVL EQMALRLTEE AEKLDIPFQF NPIVSKLENL DLENLRVKTG 240 EALAVSSVLQ LHTLLAMDDE MHRRNSPSGY KNPNSNHFQR VQINQNRRTL GDWLERDVVN 300 AYSSSPDSAL SPLSLAASPK MGSFLNALRS LSPKLMVITE QESNHNGFNL MERVTEALNF 360 YAALFDCLES TVSRVSLERH KVEKMLFGEE IKNIIACEGT DRKERHEKLE KWILRLELAG 420 FGIIPLSYHG RLQANRFLQS YGYDGYKIKE ENGCLVICWQ DRPLFSVSAW RFRRYD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-63 | 33 | 473 | 2 | 380 | Protein SCARECROW |
5b3h_D | 4e-63 | 33 | 473 | 2 | 380 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.001G023500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC184073 | 0.0 | AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299218.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | B9GM40 | 0.0 | B9GM40_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s06090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2383 | 34 | 84 | Representative plant | OGRP2564 | 14 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Potri.001G023500.1 |
Entrez Gene | 7496014 |
Publications ? help Back to Top | |||
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