PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G018900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 324aa    MW: 36670.1 Da    PI: 8.475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G018900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-05173192120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Potri.001G018900.1 173 FSCPLCFKTFNRYNNMQMHM 192
                         89*****************9 PP
2zf-C2H213.20.00026259279323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F  k + ++H +++
  Potri.001G018900.1 259 CRKCGKAFAVKGDWRTHEKNC 279
                         *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.785173200IPR007087Zinc finger, C2H2
SMARTSM003550.61173195IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5173192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-6239277No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5244277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.621257277IPR007087Zinc finger, C2H2
SMARTSM0035582257277IPR015880Zinc finger, C2H2-like
SMARTSM00355180283306IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADPYSNYFN GWYNFNHLHH LSASASSSNS SLYASHGCNM YSDNNIIYDN SFIQSHSTSP  60
PSPPLREALP LLSLISPTRH HEDQREYSSC SAMEVDKNKD REESLYDDKT VTVALHLGLP  120
RLDSADLVSS TEISSDNEEV TVASGYQTSS RTLNKGQYWI PTPSQILIGP TQFSCPLCFK  180
TFNRYNNMQM HMWGHGSQYK KGPDSLRGTQ PTAMLRLPCY CCATGCINNI DHPGAKPLRD  240
FRTLQTHYKR KHGIKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCTCGSD FKHKRSLNDH  300
IKSFGHGHST NDIDFLQEKN VRK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.001G018900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956331e-138BT095633.1 Soybean clone JCVI-FLGm-19L21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452062.10.0zinc finger protein WIP2, partial
SwissprotQ8W0311e-125ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2K2BR020.0A0A2K2BR02_POPTR; Uncharacterized protein
STRINGPOPTR_0003s20400.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-123WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]