PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.L007800.1 | ||||||||
Common Name | PHAVU_L007800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 549aa MW: 60236 Da PI: 8.3268 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 85 | 107 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Phvul.L007800.1 85 FVCEICNKGFQRDQNLQLHRRGH 107 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.2e-05 | 161 | 183 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Phvul.L007800.1 161 WKCDKCSKRYAVQSDWKAHQKTC 183 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.28E-8 | 84 | 107 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 84 | 107 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 85 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 85 | 107 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 87 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 75 | 126 | 156 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.2E-6 | 149 | 182 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.28E-8 | 156 | 182 | No hit | No description |
SMART | SM00355 | 89 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MSNISGDEGS LSSANTVEEV HQESEQQQPQ NRHGSSSGAC NTNSSTSQQQ QQQSTKKKRN 60 LPGTPDPNAE VIALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRPSNE 120 VKKRVYVCPE PSCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHQ 180 KTCGTREYKC DCGTIFARRD SFITHRAFCD ALTEENNRVN PSLTTGASMT PSLQNELQDL 240 MATMPLSTSP NNAVPEFNSN YDPSKSPLKT LSQQHLVPMP FKSMSMRGCM SSTTSGTLFG 300 GPKNVSLPSS STLQLSTNNS HTFNYFQDSK NAAASAHMSA TALLQKAAQM GAAATNNSIN 360 SPTMMQKSFV SGMTGPDPNH NPSSYDPFHP PHSDDQSHMA GISGAGAFTN QFFYKGQQEI 420 SVILDSNTSD MGIFGAMFMG NEHNQGVMKN VEQEVGANGS GLIHRRDVSE GNPMGDSRFG 480 GGDMTRVHDF LGVGGATSRA GSLHETQKQQ QQSLELEALT HQRLQMINHF HHHLPHGDSA 540 MEKSIWDI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-33 | 157 | 220 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 1e-33 | 157 | 220 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.L007800.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007163889.1 | 0.0 | hypothetical protein PHAVU_L007800g | ||||
Swissprot | Q9SCQ6 | 1e-112 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | V7D2F3 | 0.0 | V7D2F3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007163889.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-106 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.L007800.1 |
Entrez Gene | 18642726 |
Publications ? help Back to Top | |||
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