PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G178700.1 | ||||||||
Common Name | PHAVU_011G178700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19622.5 Da PI: 9.6902 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 77.9 | 1.7e-24 | 19 | 117 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C C+++ ++ +C + +yfp ++ ++ + + k+FG++n+l+l++ +++++r+ +++s++ eA+++a+dP++Ga+g+il+l+++++++ Phvul.011G178700.1 19 PCGLCRYQHKRHDLSCEFGQYFPINRLREIESASKFFGMANLLRLMRGAEPSQRQVMANSILREAQMWANDPIHGALGHILTLSSHIKSVG 109 7****************************************************************************************** PP DUF260 92 aelallke 99 el+l+++ Phvul.011G178700.1 110 RELKLVNA 117 **999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.957 | 18 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-24 | 19 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
ISICICLQKK TMSEQRNVPC GLCRYQHKRH DLSCEFGQYF PINRLREIES ASKFFGMANL 60 LRLMRGAEPS QRQVMANSIL REAQMWANDP IHGALGHILT LSSHIKSVGR ELKLVNAMLA 120 HCSHQATPQI ATTVQDNLVA SSSNPAQSST VASQEKEGAA EEKDAEVKRK NGKRKH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G178700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007133438.1 | 1e-130 | hypothetical protein PHAVU_011G178700g, partial | ||||
TrEMBL | V7AIJ9 | 1e-129 | V7AIJ9_PHAVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_007133438.1 | 1e-129 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16300 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19820.1 | 1e-20 | LOB domain-containing protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G178700.1 |
Entrez Gene | 18616547 |