PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G172800.1 | ||||||||
Common Name | PHAVU_011G172800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19304.1 Da PI: 9.7774 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.5 | 5.3e-21 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 r+++ rq+tfskRr+g++KKA+ELS++C+a++a+++fs+ +k y +s Phvul.011G172800.1 10 RVKDPNTRQITFSKRRTGLFKKANELSIMCGAKIAIVVFSPGNKPYSFS 58 6778889*************************************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.03E-25 | 1 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 26.436 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 3.49E-30 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 5.8E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.6E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MGRRKIQIAR VKDPNTRQIT FSKRRTGLFK KANELSIMCG AKIAIVVFSP GNKPYSFSHP 60 GVHLVAAEFL QQDLRPNQLQ RGPSFDVYKN HYFNLQNLDL MRQLAEEESK SAMLDEAIGH 120 GKGTRLSELQ KLHTSLADIN SKVKSEIEAA ETMILFSQEG VEFPSATREE N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-17 | 1 | 71 | 1 | 71 | MEF2C |
5f28_B | 7e-17 | 1 | 71 | 1 | 71 | MEF2C |
5f28_C | 7e-17 | 1 | 71 | 1 | 71 | MEF2C |
5f28_D | 7e-17 | 1 | 71 | 1 | 71 | MEF2C |
6byy_A | 6e-17 | 1 | 71 | 1 | 71 | MEF2 CHIMERA |
6byy_B | 6e-17 | 1 | 71 | 1 | 71 | MEF2 CHIMERA |
6byy_C | 6e-17 | 1 | 71 | 1 | 71 | MEF2 CHIMERA |
6byy_D | 6e-17 | 1 | 71 | 1 | 71 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G172800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007133362.1 | 1e-125 | hypothetical protein PHAVU_011G172800g | ||||
TrEMBL | V7AMK2 | 1e-124 | V7AMK2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007133362.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2424 | 29 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G66656.1 | 6e-29 | AGAMOUS-like 91 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G172800.1 |
Entrez Gene | 18616484 |