PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G134300.1 | ||||||||
Common Name | PHAVU_011G134300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 28595.5 Da PI: 5.9922 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.3e-13 | 72 | 118 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+++P a K++Ka+ L +++ ++k+L Phvul.011G134300.1 72 KNHSEAERRRRARINAHLDTLRSVIPGA-----MKMDKASLLGEVITHLKEL 118 58*************************9.....7****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.923 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-13 | 72 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-10 | 72 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-14 | 72 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.3E-13 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.16E-5 | 82 | 120 | No hit | No description |
CDD | cd04873 | 5.28E-7 | 157 | 228 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 3.1E-5 | 157 | 199 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEMEEFLWGV DIDGDVSKGN SDGFEGSNGV IGSGCGSSFS LVLDRERGEL VEAPVKLERK 60 GVSTERSTEA LKNHSEAERR RRARINAHLD TLRSVIPGAM KMDKASLLGE VITHLKELKR 120 NAAEACEGLM IPKDNDEISV EEQEGGLNGF PYSIRASLCC EYKPGLLSDI RQALDSLHLM 180 ITRADIATLE GRMKNVFVII SCKEHNFEDA SYRQFLAGSV HQALKSVLNR FSVSQDILGT 240 KKRRRISIFS SSSLEDFL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 245 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G134300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132898.1 | 0.0 | hypothetical protein PHAVU_011G134300g | ||||
TrEMBL | V7AH01 | 0.0 | V7AH01_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132898.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 5e-29 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G134300.1 |
Entrez Gene | 18616080 |