PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G104700.1
Common NamePHAVU_011G104700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 720aa    MW: 78839.2 Da    PI: 5.641
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G104700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2055110156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Phvul.011G104700.1  55 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 110
                         688999***********************************************999 PP
2START2261.2e-702454651206
                         HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         ela +a++el+ +a+ ++p+W +      +++n+de++++f+++ +     ++ ea+r+s+vv+m+++ lve+l+d++ qW++ +     +
  Phvul.011G104700.1 245 ELAVAAMEELIGMAQMNDPLWLTTLdatsTILNEDEYIRSFPRGIGpkptgFKCEASRESAVVIMNHVSLVEILMDVN-QWSTVFSgivsR 334
                         57899*******************999****************999********************************.************ PP

                         EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS
               START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162
                         a+tlev+s+g      galq+m+aelq+++plvp R+++fvRy++q+++g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+s
  Phvul.011G104700.1 335 AMTLEVLSTGvagnynGALQVMTAELQLPTPLVPtRESYFVRYCKQHSDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYS 421
                         ****************************************************************99....5******************** PP

                         EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         kv+wvehv++++r +h+l+++lv+sg+a+gak+wvatl+rqce+
  Phvul.011G104700.1 422 KVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWVATLDRQCER 465
                         ******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-2334110IPR009057Homeodomain-like
SuperFamilySSF466891.34E-1943112IPR009057Homeodomain-like
PROSITE profilePS5007116.92552112IPR001356Homeobox domain
SMARTSM003891.2E-1953116IPR001356Homeobox domain
PfamPF000464.0E-1855110IPR001356Homeobox domain
CDDcd000862.42E-1955113No hitNo description
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PROSITE profilePS5084844.255236468IPR002913START domain
SuperFamilySSF559616.87E-35236467No hitNo description
CDDcd088751.77E-128240464No hitNo description
SMARTSM002341.3E-64245465IPR002913START domain
PfamPF018521.9E-59246465IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-5345456IPR023393START-like domain
SuperFamilySSF559613.92E-27484711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MFQPNLMEAL EMGQNTSESE VPRIREDEFD SATKSGSENH EGASGDDQDP RPNKKKRYHR  60
HTQHQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK TQHERHENTQ  120
LRTENEKLRA DNMRYREALS NASCPNCGGP TAIGEMSFDE HHLRLENARL REEIDRISAI  180
AAKYVGKPVV NYSNISPTLP PRPLELGVGA GFGGQPGIGV DMYGAGDLLR SISGPTEADK  240
PIIIELAVAA MEELIGMAQM NDPLWLTTLD ATSTILNEDE YIRSFPRGIG PKPTGFKCEA  300
SRESAVVIMN HVSLVEILMD VNQWSTVFSG IVSRAMTLEV LSTGVAGNYN GALQVMTAEL  360
QLPTPLVPTR ESYFVRYCKQ HSDGTWAVVD VSLDNLRPSP SARCRRRPSG CLIQEMPNGY  420
SKVIWVEHVE VDDRGVHSLY KQLVSSGHAF GAKRWVATLD RQCERLASAM ATNIPTVDVG  480
VITNQEGRKS MMKLAERMVI SFCAGVSAST AHTWTTLSGT GADDVRVMTR KSVDDPGRPP  540
GIVLSAATSF WLPVPPKRVF DFLRDENSRN EWDILSNGGV VQEMAHIANG RDTGNCVSLL  600
RVNSANSSQS NMLILQESCT DSTGSFVIYA PVDIVAMNVV LNGGDPDYVA LLPSGFAILP  660
DGTISHETGP GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN NLIACTVERI KASLSGETA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G104700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132557.10.0hypothetical protein PHAVU_011G104700g
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLV7AKA60.0V7AKA6_PHAVU; Uncharacterized protein
STRINGXP_007132557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2