PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.011G093700.1

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 461aa MW: 50105.3 Da PI: 7.3455

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.011G093700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	8e-11	185	225	4	44
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L+ ++ Phvul.011G093700.1 185 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQD 225 6889*************************877766666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-7	182	258	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.6E-8	184	228	No hit	No description
PROSITE profile	PS50217	9.094	184	228	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.3E-8	185	227	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.56E-7	186	229	No hit	No description
PROSITE pattern	PS00036	0	189	204	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-30	266	341	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MAGQRVGETG LSESGPSSHH VPYGVLHGIN TSASGLMNQG SAFDFGELEE AFALSGIKIR 60 SDEAKSSALF TGRPSATLEM FPSWPMRFQQ TPRGGSKSGG ESTDSGSGVN TLSSKTELQF 120 ETESPISIKA SSSDHQQAFD QLQQQQETAA DASRAGTSQT QSAAKSPQEK RKGAAGSTSE 180 KPLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRLKLT HLEQDLQRAR SQGVFMGCGG 240 AGGSISSGAA MFDMEYARWL EDDHRHMAEL RTGLQAPLSD GELRVIVDGY LSHYDEVFRL 300 KGVAAKTDVF HLINGMWTSP AERCFLWIGG FRPSELITML MQQLEPLAEQ QFMGICGLRH 360 SSLQAEEALT QGLEQLQQSL VDTIAGGSLA DGVQQMVAAM AKLANLEGFV GQADNLRQQT 420 LHQLCRLLTV RQAARCFVVI GEYYGRLRAL SSLWASRPRE *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MAGQRVGETG LSESGPSSHH VPYGVLHGIN TSASGLMNQG SAFDFGELEE AFALSGIKIR  60
SDEAKSSALF TGRPSATLEM FPSWPMRFQQ TPRGGSKSGG ESTDSGSGVN TLSSKTELQF  120
ETESPISIKA SSSDHQQAFD QLQQQQETAA DASRAGTSQT QSAAKSPQEK RKGAAGSTSE  180
KPLDAKTLRR LAQNREAARK SRLRKKAYVQ QLESSRLKLT HLEQDLQRAR SQGVFMGCGG  240
AGGSISSGAA MFDMEYARWL EDDHRHMAEL RTGLQAPLSD GELRVIVDGY LSHYDEVFRL  300
KGVAAKTDVF HLINGMWTSP AERCFLWIGG FRPSELITML MQQLEPLAEQ QFMGICGLRH  360
SSLQAEEALT QGLEQLQQSL VDTIAGGSLA DGVQQMVAAM AKLANLEGFV GQADNLRQQT  420
LHQLCRLLTV RQAARCFVVI GEYYGRLRAL SSLWASRPRE *

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.011G093700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-122	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014491517.1	0.0	transcription factor TGA9 isoform X1
Refseq	XP_014491525.1	0.0	transcription factor TGA9 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3TCN1	0.0	A0A1S3TCN1_VIGRR; transcription factor TGA9 isoform X1
STRING	GLYMA12G09430.5	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-180	bZIP family protein

Link Out ? help Back to Top
Phytozome	Phvul.011G093700.1

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]