PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G084500.1
Common NamePHAVU_011G084500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 312aa    MW: 34933 Da    PI: 6.8987
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G084500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Phvul.011G084500.1 14 KGPWSPEEDTKLKEYIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding36.98.2e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Phvul.011G084500.1  69 GDFSDEEDRIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.998962IPR017930Myb domain
SuperFamilySSF466893.06E-2711109IPR009057Homeodomain-like
SMARTSM007179.2E-131364IPR001005SANT/Myb domain
PfamPF002492.8E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-251569IPR009057Homeodomain-like
CDDcd001676.56E-101662No hitNo description
PROSITE profilePS5129421.69663117IPR017930Myb domain
SMARTSM007171.0E-1067115IPR001005SANT/Myb domain
PfamPF002492.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWSPE EDTKLKEYIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
LPLSHHRKQL SFPSSTLQNP PPSPSSHQLY GEYGTYIPVT TSFTGMEHLS LPSANYESTT  180
TSVSQTFYQS QDSMASVSPM QCYYPMSDSM LMFGSEGSCS SSDGSCTQGR EIKLEEIGYH  240
SYNHNLMLSY NNNNTNDGDK SCVGGCFSQT QTALDYDLED IKQLISSSSS SFNNNVDENK  300
TEEKAMYCCY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G084500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0945870.0BT094587.1 Soybean clone JCVI-FLGm-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132317.10.0hypothetical protein PHAVU_011G084500g
TrEMBLV7AJP00.0V7AJP0_PHAVU; Uncharacterized protein
STRINGXP_007132317.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-73myb domain protein 36