PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G082200.2
Common NamePHAVU_011G082200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 745aa    MW: 82211.5 Da    PI: 6.8857
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G082200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-095405771954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Phvul.011G082200.2 540 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 577
                         665559******************************87 PP
2BELL105.82.8e-34395465272
                BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         r e qk kakLl +++eV +r+kqy++q+q+v+ sFe+vagl sa+pY+slAlk +S+hFrcLk+ai++q+
  Phvul.011G082200.2 395 RPECQKNKAKLLYMQDEVTRRFKQYHQQMQMVVQSFETVAGLSSATPYVSLALKSVSKHFRCLKNAISDQL 465
                         5689****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.1E-37287463IPR006563POX domain
PfamPF075264.4E-41292462IPR006563POX domain
PROSITE profilePS5007111.985518581IPR001356Homeobox domain
CDDcd000862.22E-11521582No hitNo description
SMARTSM003892.4E-8521585IPR001356Homeobox domain
SuperFamilySSF466897.27E-17523587IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-27524585IPR009057Homeodomain-like
PfamPF059203.4E-18538577IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MSSLRPELHV AQQLRRDKLR IQNSSQHLQE FPSNLEQLSL HPGFNLDILQ VRNVRNGNML  60
DEALYSSDMI TFSTASNPLS NPRNPLECQE LMMAQYGSTS FPHSSSPKDQ QCGPRHLGSN  120
WMVNYNESNT NTNNTFFSSD LNNNASGEMA NREIQKQLGE MHYPPSSSSP PLYHNALQDM  180
AYGVWGGNHA EPVLHYQANS ELRFGGANLW ANSSGMGFKK NNEQDINPHQ GLSLSLSSNS  240
QSKPCFEEGS ASDDPTQYSK SVKCSMKLNV LSNNTVYRNV GPLGPFTGYA TILKSSRFLK  300
PCQQLLDEWC CQYGSKSARG GGCDVPEWVS RDVSAASISA AAAAGDALNV DESEGAAKGG  360
GNLGVSSSVL YSSNENDNTN SADGGATSSF CLSSRPECQK NKAKLLYMQD EVTRRFKQYH  420
QQMQMVVQSF ETVAGLSSAT PYVSLALKSV SKHFRCLKNA ISDQLKLTCE VLGEDFSLPT  480
TSNGGKFDNN MARLRCIDQS FQKHKSLGAN INFLEPQQHV WRPQRGLPER SVAILKAWLF  540
EHFLHPYPTD TDKHMLATQT GLSRNQVSNW FINARVRVWK PMVEEIHMLE TKGAAEPRQA  600
SNKNDQVASA SEGSNQPKSD HQPVSRFGTQ ASSHAIHDNQ FQCLEMGSSS SAGNEEHIGM  660
NEVQWSQEKR SKLECQIATT PNMDGTVMGF MPYRRGGLEA GGLGSVSLTL GLRHSVEGVQ  720
QQQLQQEEDL RRQFGGHMIH DFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-15527585563Homeobox protein Meis2
4xrm_B8e-15527585563Homeobox protein Meis2
4xrs_A6e-15527584158Homeobox protein Meis1
4xrs_B6e-15527584158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G082200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132286.10.0hypothetical protein PHAVU_011G082200g
RefseqXP_007132287.10.0hypothetical protein PHAVU_011G082200g
RefseqXP_007132288.10.0hypothetical protein PHAVU_011G082200g
TrEMBLV7AFC30.0V7AFC3_PHAVU; Uncharacterized protein
STRINGXP_007132286.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.23e-69BEL1-like homeodomain 3