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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.011G072200.1 | ||||||||
Common Name | PHAVU_011G072200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21816.7 Da PI: 4.781 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.9 | 3.1e-42 | 35 | 134 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeA r+rdPvyG++g i +lq+q+++l+ Phvul.011G072200.1 35 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASSRIRDPVYGCAGAICQLQKQVNELQ 125 7****************************************************************************************** PP DUF260 92 aelallkee 100 a+la+ ++e Phvul.011G072200.1 126 AQLAKSQAE 134 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.172 | 34 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-42 | 35 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MESSDTYTPA SSAPLSHSPT SSSSSPPPPT VVMTPCAACK ILRRRCAEKC VLAPYFPPTE 60 PAKFTIAHRV FGASNIIKFL QELPESQRAD AVTSMVYEAS SRIRDPVYGC AGAICQLQKQ 120 VNELQAQLAK SQAELVTMQL QQANLVALIC MEMAQSPEES PQQSVDDFIS TPPHSGGYQS 180 GMNFFEENTS PNSLWEPLWT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 35 | 136 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 35 | 136 | 11 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.011G072200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097175 | 0.0 | BT097175.1 Soybean clone JCVI-FLGm-21N19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132174.1 | 1e-147 | hypothetical protein PHAVU_011G072200g | ||||
Swissprot | Q9SK08 | 3e-75 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | V7AH57 | 1e-145 | V7AH57_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132174.1 | 1e-146 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 9e-77 | LOB domain-containing protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.011G072200.1 |
Entrez Gene | 18615431 |