PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G063400.1
Common NamePHAVU_011G063400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 699aa    MW: 77795.3 Da    PI: 9.5038
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G063400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-08575624147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++ +E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Phvul.011G063400.1 575 RRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFdnaKHRTYVDLKDKWKTL 624
                         6799************************99999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.905.6E-4379453No hitNo description
SuperFamilySSF542362.46E-6380465IPR029071Ubiquitin-related domain
PROSITE profilePS5129413.745570629IPR017930Myb domain
SMARTSM007171.9E-7574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-10575625IPR009057Homeodomain-like
CDDcd116601.06E-16576626No hitNo description
SuperFamilySSF466891.3E-15576656IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MVLQKRLEYG FNGYQAPTMP RASRSVRRRA KFQRAEDKQK CAFDLLATVA GKLLQERENP  60
AISSYTSSNK DQCRFVKECH DANKPSKSEL SDERSCDKKS LKEFPHLAID DHAKIASIVA  120
SSSCLERFIA KKLVDGNSHI KMENVTGEVK LDSSGYPKDS HFKIDGDTSK GKDGMHELEK  180
VPIGSGIEMY SFGDPLDENP PALISLGGNA KLSGYNDRIP CSLLSKGCDN VAVVSRDDDE  240
NSSGCTHPIN TKTRTFRPKN CIGDSAISKR LASNFQKVAQ KLKYDTLSNS DGVWKKTYHN  300
QRKCNKRQNS QMNIPFKKRK LFNYKSVSNS KGFIRSGGIY YAPKNCINQD ACGSLPRMHR  360
DPGIPSLEAC QHQVLRRIGS HVKLRIKSFR VPELFIEVPE TATIGSLKRT VMDAVTAVLG  420
GELHIGVFLQ GKKVRDDSKT LLQTGISHHN QLDALGFTLE PNSSQSLPIV CAAHSPRPST  480
DVPPPVIRCP SRPAVIHQGI QGNSDMLPEH QVTSFGSQFE SDNDSGPSPA NTYVDKGMED  540
SKELVTVLEK GNEELAMVSV PQKPRRSMVV QRRLRRPFSV DEVEALVQAV EKLGTGRWRD  600
VKLCAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVIV AHAFWSHQQT  660
KQQHPETETV FSFNRKGQGL SSASGHVDES VLVSDFCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-505606622104Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G063400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132058.10.0hypothetical protein PHAVU_011G063400g
TrEMBLV7AEP00.0V7AEP0_PHAVU; Uncharacterized protein
STRINGXP_007132058.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-125TRF-like 2